Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 TSPY5P-201ENST00000426936 936 ntBASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 AP000550.4-202ENST00000639755 178 ntBASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 SLC25A24-204ENST00000569674 2357 ntBASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.43■□□□□ 0.86
LIMD1Q9UGP4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 AC121338.2-201ENST00000622535 1744 ntBASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 YBX1P2-201ENST00000489612 999 ntBASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.42■□□□□ 0.86
LIMD1Q9UGP4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 AC009947.2-201ENST00000444014 672 ntBASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 AC092647.4-201ENST00000457211 535 ntBASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 AP000692.2-201ENST00000608391 879 ntBASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 AC116562.4-202ENST00000641738 218 ntBASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIMD1Q9UGP4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 KRT18P48-201ENST00000434763 852 ntBASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIMD1Q9UGP4 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMD1Q9UGP4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMD1Q9UGP4 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIMD1Q9UGP4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.39■□□□□ 0.86
LIMD1Q9UGP4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
LIMD1Q9UGP4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.39■□□□□ 0.86
LIMD1Q9UGP4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.39■□□□□ 0.85
LIMD1Q9UGP4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms