Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS29Q9UBQ0 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS29Q9UBQ0 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS29Q9UBQ0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS29Q9UBQ0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 AC060766.5-201ENST00000590539 871 ntBASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 AC133041.1-202ENST00000642053 222 ntBASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS29Q9UBQ0 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
VPS29Q9UBQ0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS29Q9UBQ0 AC124283.5-201ENST00000624661 1809 ntBASIC18.77■□□□□ 0.59
VPS29Q9UBQ0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 PNMA6B-201ENST00000538162 1200 ntBASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 AC098934.4-201ENST00000564127 592 ntBASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS29Q9UBQ0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 AL032819.2-201ENST00000624543 2162 ntBASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 AC083880.1-201ENST00000608266 535 ntBASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS29Q9UBQ0 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AC018445.3-201ENST00000624177 1945 ntBASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AC069152.1-201ENST00000438030 544 ntBASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AC090192.1-201ENST00000517740 490 ntBASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AC087289.5-201ENST00000586076 3175 ntBASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS29Q9UBQ0 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 BX323043.1-201ENST00000641006 1765 ntBASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS29Q9UBQ0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms