Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL591742.1-201ENST00000604433 565 ntBASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CHMP1AQ9HD42 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 TERF1P5-201ENST00000477545 1207 ntBASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 NEFHP1-201ENST00000412845 2629 ntBASIC16.82■□□□□ 0.28
CHMP1AQ9HD42 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 GUK1-205ENST00000366722 850 ntTSL 3 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 ZNRF2P3-201ENST00000424200 374 ntBASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 AC010536.3-201ENST00000620306 533 ntBASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CHMP1AQ9HD42 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 PBX1-209ENST00000485769 834 ntTSL 2 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms