Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MMP28Q9H239 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.23■□□□□ 0.35
MMP28Q9H239 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.23■□□□□ 0.35
MMP28Q9H239 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MMP28Q9H239 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MMP28Q9H239 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.22■□□□□ 0.35
MMP28Q9H239 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
MMP28Q9H239 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC17.22■□□□□ 0.35
MMP28Q9H239 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.22■□□□□ 0.35
MMP28Q9H239 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC17.22■□□□□ 0.35
MMP28Q9H239 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC17.22■□□□□ 0.35
MMP28Q9H239 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.22■□□□□ 0.35
MMP28Q9H239 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.22■□□□□ 0.35
MMP28Q9H239 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
MMP28Q9H239 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MMP28Q9H239 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.22■□□□□ 0.35
MMP28Q9H239 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.21■□□□□ 0.35
MMP28Q9H239 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
MMP28Q9H239 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
MMP28Q9H239 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.21■□□□□ 0.35
MMP28Q9H239 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
MMP28Q9H239 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.21■□□□□ 0.35
MMP28Q9H239 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
MMP28Q9H239 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.21■□□□□ 0.35
MMP28Q9H239 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4L2-201ENST00000561772 1275 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 EEF1DP3-203ENST00000566025 782 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 AC053503.5-201ENST00000601508 636 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4L6-201ENST00000626483 1275 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4L1-201ENST00000627662 1275 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4L8-201ENST00000629013 1275 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4L3-201ENST00000630187 1275 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4L7-201ENST00000630678 1275 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 DUX4L5-201ENST00000630834 1275 ntBASIC17.21■□□□□ 0.35
MMP28Q9H239 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
MMP28Q9H239 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
MMP28Q9H239 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
MMP28Q9H239 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.34
MMP28Q9H239 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
MMP28Q9H239 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
MMP28Q9H239 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
MMP28Q9H239 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.2■□□□□ 0.34
MMP28Q9H239 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
MMP28Q9H239 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
MMP28Q9H239 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
MMP28Q9H239 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
MMP28Q9H239 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.2■□□□□ 0.34
MMP28Q9H239 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.2■□□□□ 0.34
MMP28Q9H239 AC090192.1-201ENST00000517740 490 ntBASIC17.2■□□□□ 0.34
MMP28Q9H239 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.2■□□□□ 0.34
MMP28Q9H239 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 AL137784.2-201ENST00000607332 1000 ntBASIC17.2■□□□□ 0.34
MMP28Q9H239 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.2■□□□□ 0.34
MMP28Q9H239 RARRES2P11-201ENST00000635158 484 ntBASIC17.2■□□□□ 0.34
MMP28Q9H239 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
MMP28Q9H239 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms