Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.33■■□□□ 1.33
UPF3BQ9BZI7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.33■■□□□ 1.33
UPF3BQ9BZI7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC23.33■■□□□ 1.33
UPF3BQ9BZI7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3BQ9BZI7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.33■■□□□ 1.33
UPF3BQ9BZI7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC23.33■■□□□ 1.33
UPF3BQ9BZI7 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
UPF3BQ9BZI7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC23.33■■□□□ 1.32
UPF3BQ9BZI7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC23.33■■□□□ 1.32
UPF3BQ9BZI7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
UPF3BQ9BZI7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
UPF3BQ9BZI7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC23.33■■□□□ 1.32
UPF3BQ9BZI7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.32
UPF3BQ9BZI7 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
UPF3BQ9BZI7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 TFP1-202ENST00000475455 1573 ntBASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 TSPY20P-201ENST00000450910 630 ntBASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.32■■□□□ 1.32
UPF3BQ9BZI7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 AL020996.1-203ENST00000536896 2307 ntBASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 AL390719.1-204ENST00000412397 1219 ntBASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 MYC-209ENST00000641252 345 ntBASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
UPF3BQ9BZI7 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 AC073210.2-201ENST00000430369 194 ntBASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
UPF3BQ9BZI7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 RER1-204ENST00000378518 522 ntTSL 3 BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 MIR4758-201ENST00000577688 71 ntBASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
UPF3BQ9BZI7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms