Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 AC013268.1-206ENST00000638368 961 ntBASIC17.04■□□□□ 0.32
NKX3-1Q99801 AC112229.1-201ENST00000639295 961 ntBASIC17.04■□□□□ 0.32
NKX3-1Q99801 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 AC007613.1-201ENST00000572811 2597 ntBASIC17.04■□□□□ 0.32
NKX3-1Q99801 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.04■□□□□ 0.32
NKX3-1Q99801 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
NKX3-1Q99801 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.03■□□□□ 0.32
NKX3-1Q99801 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 CNN2P6-201ENST00000439038 900 ntBASIC17.03■□□□□ 0.32
NKX3-1Q99801 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 AC080038.1-201ENST00000611274 1154 ntBASIC17.03■□□□□ 0.32
NKX3-1Q99801 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
NKX3-1Q99801 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
NKX3-1Q99801 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 RARRES2P4-201ENST00000514074 484 ntBASIC17.02■□□□□ 0.32
NKX3-1Q99801 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
NKX3-1Q99801 AL031963.3-201ENST00000606441 850 ntBASIC17.02■□□□□ 0.32
NKX3-1Q99801 BID-214ENST00000617586 542 ntTSL 5 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
NKX3-1Q99801 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
NKX3-1Q99801 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms