Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.86■□□□□ 0.61
CLIP3Q96DZ5 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 HTR7P1-201ENST00000538670 1336 ntBASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CLIP3Q96DZ5 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 KRT16P6-202ENST00000425692 1426 ntBASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 MIR4785-201ENST00000585005 73 ntBASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 AC113410.3-201ENST00000623366 203 ntBASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP3Q96DZ5 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP3Q96DZ5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 AL353807.1-201ENST00000427475 662 ntBASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP3Q96DZ5 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms