Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AC010947.1-201ENST00000623454 693 ntBASIC6.03□□□□□ -1.44
SYNE1Q8NF91 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 KRT18P35-201ENST00000510488 1269 ntBASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 SLC25A24-204ENST00000569674 2357 ntBASIC6.02□□□□□ -1.44
SYNE1Q8NF91 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.44
SYNE1Q8NF91 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC6.02□□□□□ -1.44
SYNE1Q8NF91 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 FITM1-202ENST00000559294 800 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 NT5C-211ENST00000582170 653 ntTSL 3 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 NBPF21P-201ENST00000425093 1451 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AC073508.3-201ENST00000619697 1419 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AC110285.5-201ENST00000611501 352 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AF186192.3-201ENST00000583427 947 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AC087289.5-201ENST00000586076 3175 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 KRT16P5-201ENST00000455284 522 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms