Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 AC073111.5-205ENST00000641717 521 ntBASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 AL049812.1-201ENST00000432563 2267 ntBASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF540Q8NDQ6 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 CDCA4P2-201ENST00000441182 718 ntBASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 KRT18P61-201ENST00000585825 1298 ntBASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
ZNF540Q8NDQ6 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
ZNF540Q8NDQ6 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
ZNF540Q8NDQ6 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 HLA-L-209ENST00000420110 1011 ntBASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 AC006970.2-201ENST00000450065 779 ntBASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 AC011767.1-201ENST00000617410 1153 ntBASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 AC005332.8-201ENST00000622750 2735 ntBASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
ZNF540Q8NDQ6 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
ZNF540Q8NDQ6 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms