Protein–RNA interactions for Protein: Q8NC44

RETREG2, Reticulophagy regulator 2, humanhuman

Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2Q8NC44 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
RETREG2Q8NC44 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.15
RETREG2Q8NC44 PTBP1P-201ENST00000554374 1601 ntBASIC22.2■■□□□ 1.15
RETREG2Q8NC44 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 FAM197Y1-201ENST00000421178 764 ntBASIC22.2■■□□□ 1.14
RETREG2Q8NC44 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 AL031963.3-201ENST00000606441 850 ntBASIC22.2■■□□□ 1.14
RETREG2Q8NC44 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RETREG2Q8NC44 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 AC073195.1-201ENST00000607241 877 ntBASIC22.19■■□□□ 1.14
RETREG2Q8NC44 DECR2-212ENST00000627716 352 ntTSL 2 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
RETREG2Q8NC44 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 TCF3P1-201ENST00000423021 1937 ntBASIC22.18■■□□□ 1.14
RETREG2Q8NC44 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.18■■□□□ 1.14
RETREG2Q8NC44 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 AC004264.1-201ENST00000608354 794 ntBASIC22.17■■□□□ 1.14
RETREG2Q8NC44 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RETREG2Q8NC44 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 AC007952.6-201ENST00000573168 2673 ntBASIC22.16■■□□□ 1.14
RETREG2Q8NC44 AC003957.1-201ENST00000625108 2673 ntBASIC22.16■■□□□ 1.14
RETREG2Q8NC44 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 KRT8P17-201ENST00000453110 1448 ntBASIC22.16■■□□□ 1.14
RETREG2Q8NC44 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 RN7SL850P-201ENST00000579959 291 ntBASIC22.16■■□□□ 1.14
RETREG2Q8NC44 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC22.16■■□□□ 1.14
RETREG2Q8NC44 AL121906.2-201ENST00000621597 723 ntBASIC22.16■■□□□ 1.14
RETREG2Q8NC44 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms