Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
USP48Q86UV5 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24■■□□□ 1.43
USP48Q86UV5 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24■■□□□ 1.43
USP48Q86UV5 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC24■■□□□ 1.43
USP48Q86UV5 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
USP48Q86UV5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
USP48Q86UV5 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC24■■□□□ 1.43
USP48Q86UV5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
USP48Q86UV5 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
USP48Q86UV5 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC23.99■■□□□ 1.43
USP48Q86UV5 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 AC023632.3-201ENST00000521633 145 ntBASIC23.99■■□□□ 1.43
USP48Q86UV5 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC23.99■■□□□ 1.43
USP48Q86UV5 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC23.99■■□□□ 1.43
USP48Q86UV5 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC23.99■■□□□ 1.43
USP48Q86UV5 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC23.99■■□□□ 1.43
USP48Q86UV5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
USP48Q86UV5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP48Q86UV5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.98■■□□□ 1.43
USP48Q86UV5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
USP48Q86UV5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
USP48Q86UV5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC23.98■■□□□ 1.43
USP48Q86UV5 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC23.98■■□□□ 1.43
USP48Q86UV5 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC23.98■■□□□ 1.43
USP48Q86UV5 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC23.98■■□□□ 1.43
USP48Q86UV5 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC23.98■■□□□ 1.43
USP48Q86UV5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC23.98■■□□□ 1.43
USP48Q86UV5 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.98■■□□□ 1.43
USP48Q86UV5 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
USP48Q86UV5 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC23.98■■□□□ 1.43
USP48Q86UV5 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23.98■■□□□ 1.43
USP48Q86UV5 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
USP48Q86UV5 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC23.98■■□□□ 1.43
USP48Q86UV5 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.98■■□□□ 1.43
USP48Q86UV5 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
USP48Q86UV5 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP48Q86UV5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP48Q86UV5 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP48Q86UV5 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP48Q86UV5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP48Q86UV5 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.97■■□□□ 1.43
USP48Q86UV5 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
USP48Q86UV5 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
USP48Q86UV5 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC23.97■■□□□ 1.43
USP48Q86UV5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USP48Q86UV5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC23.97■■□□□ 1.43
USP48Q86UV5 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC23.97■■□□□ 1.43
USP48Q86UV5 AC112907.3-201ENST00000577781 2400 ntBASIC23.97■■□□□ 1.43
USP48Q86UV5 AL121906.2-201ENST00000621597 723 ntBASIC23.97■■□□□ 1.43
USP48Q86UV5 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
USP48Q86UV5 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP48Q86UV5 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP48Q86UV5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.96■■□□□ 1.43
USP48Q86UV5 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP48Q86UV5 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP48Q86UV5 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
USP48Q86UV5 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
USP48Q86UV5 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.96■■□□□ 1.43
USP48Q86UV5 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.96■■□□□ 1.43
USP48Q86UV5 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP48Q86UV5 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC23.96■■□□□ 1.43
USP48Q86UV5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.96■■□□□ 1.43
USP48Q86UV5 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
USP48Q86UV5 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC23.96■■□□□ 1.43
USP48Q86UV5 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC23.96■■□□□ 1.43
USP48Q86UV5 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC23.96■■□□□ 1.43
USP48Q86UV5 AC006011.2-201ENST00000621313 1158 ntBASIC23.96■■□□□ 1.43
USP48Q86UV5 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP48Q86UV5 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP48Q86UV5 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC23.96■■□□□ 1.43
USP48Q86UV5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC23.95■■□□□ 1.43
USP48Q86UV5 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms