Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC14.69□□□□□ -0.06
FOXA3P55318 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
FOXA3P55318 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
FOXA3P55318 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA3P55318 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA3P55318 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
FOXA3P55318 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
FOXA3P55318 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC14.68□□□□□ -0.06
FOXA3P55318 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC14.68□□□□□ -0.06
FOXA3P55318 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 AC120498.10-201ENST00000621827 505 ntBASIC14.68□□□□□ -0.06
FOXA3P55318 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA3P55318 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
FOXA3P55318 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC14.68□□□□□ -0.06
FOXA3P55318 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
FOXA3P55318 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
FOXA3P55318 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.68□□□□□ -0.06
FOXA3P55318 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
FOXA3P55318 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
FOXA3P55318 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
FOXA3P55318 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 AL390961.4-201ENST00000623958 2535 ntBASIC14.67□□□□□ -0.06
FOXA3P55318 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
FOXA3P55318 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.67□□□□□ -0.06
FOXA3P55318 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC14.67□□□□□ -0.06
FOXA3P55318 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC14.67□□□□□ -0.06
FOXA3P55318 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
FOXA3P55318 TRIR-202ENST00000588213 841 ntTSL 3 BASIC14.67□□□□□ -0.06
FOXA3P55318 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 FAM21FP-204ENST00000608637 956 ntBASIC14.67□□□□□ -0.06
FOXA3P55318 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 AC135050.7-201ENST00000624508 2218 ntBASIC14.67□□□□□ -0.06
FOXA3P55318 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 AC009113.1-201ENST00000570267 2443 ntBASIC14.67□□□□□ -0.06
FOXA3P55318 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
FOXA3P55318 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.67□□□□□ -0.06
FOXA3P55318 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
FOXA3P55318 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC14.66□□□□□ -0.06
FOXA3P55318 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
FOXA3P55318 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms