Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.99■□□□□ 0.63
HNF4AP41235 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HNF4AP41235 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.98■□□□□ 0.63
HNF4AP41235 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.98■□□□□ 0.63
HNF4AP41235 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.98■□□□□ 0.63
HNF4AP41235 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HNF4AP41235 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.98■□□□□ 0.63
HNF4AP41235 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HNF4AP41235 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HNF4AP41235 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HNF4AP41235 CD99P1-205ENST00000527459 561 ntBASIC18.98■□□□□ 0.63
HNF4AP41235 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.98■□□□□ 0.63
HNF4AP41235 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.98■□□□□ 0.63
HNF4AP41235 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.98■□□□□ 0.63
HNF4AP41235 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.98■□□□□ 0.63
HNF4AP41235 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
HNF4AP41235 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HNF4AP41235 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
HNF4AP41235 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.98■□□□□ 0.63
HNF4AP41235 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HNF4AP41235 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.98■□□□□ 0.63
HNF4AP41235 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
HNF4AP41235 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.98■□□□□ 0.63
HNF4AP41235 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HNF4AP41235 TFP1-202ENST00000475455 1573 ntBASIC18.98■□□□□ 0.63
HNF4AP41235 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HNF4AP41235 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HNF4AP41235 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HNF4AP41235 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HNF4AP41235 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HNF4AP41235 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HNF4AP41235 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HNF4AP41235 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.97■□□□□ 0.63
HNF4AP41235 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.97■□□□□ 0.63
HNF4AP41235 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.97■□□□□ 0.63
HNF4AP41235 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.97■□□□□ 0.63
HNF4AP41235 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HNF4AP41235 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.97■□□□□ 0.63
HNF4AP41235 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.96■□□□□ 0.63
HNF4AP41235 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
HNF4AP41235 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.96■□□□□ 0.63
HNF4AP41235 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
HNF4AP41235 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 UNC93B5-201ENST00000530315 699 ntBASIC18.96■□□□□ 0.63
HNF4AP41235 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.96■□□□□ 0.63
HNF4AP41235 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.96■□□□□ 0.63
HNF4AP41235 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
HNF4AP41235 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HNF4AP41235 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.95■□□□□ 0.62
HNF4AP41235 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.95■□□□□ 0.62
HNF4AP41235 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.95■□□□□ 0.62
HNF4AP41235 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.95■□□□□ 0.62
HNF4AP41235 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.95■□□□□ 0.62
HNF4AP41235 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
HNF4AP41235 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.95■□□□□ 0.62
HNF4AP41235 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.95■□□□□ 0.62
HNF4AP41235 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.95■□□□□ 0.62
HNF4AP41235 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.95■□□□□ 0.62
HNF4AP41235 RPS2P52-201ENST00000469610 820 ntBASIC18.95■□□□□ 0.62
HNF4AP41235 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.95■□□□□ 0.62
HNF4AP41235 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.95■□□□□ 0.62
HNF4AP41235 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.95■□□□□ 0.62
HNF4AP41235 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.95■□□□□ 0.62
HNF4AP41235 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.95■□□□□ 0.62
HNF4AP41235 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
HNF4AP41235 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HNF4AP41235 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
HNF4AP41235 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
HNF4AP41235 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms