Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LDLRP01130 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LDLRP01130 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 AL691432.2-201ENST00000607222 2038 ntBASIC18.86■□□□□ 0.61
LDLRP01130 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.86■□□□□ 0.61
LDLRP01130 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.86■□□□□ 0.61
LDLRP01130 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
LDLRP01130 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
LDLRP01130 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.86■□□□□ 0.61
LDLRP01130 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.86■□□□□ 0.61
LDLRP01130 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.86■□□□□ 0.61
LDLRP01130 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.86■□□□□ 0.61
LDLRP01130 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LDLRP01130 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.85■□□□□ 0.61
LDLRP01130 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.85■□□□□ 0.61
LDLRP01130 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
LDLRP01130 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 ECEL1P3-201ENST00000427961 737 ntBASIC18.85■□□□□ 0.61
LDLRP01130 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
LDLRP01130 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.85■□□□□ 0.61
LDLRP01130 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.85■□□□□ 0.61
LDLRP01130 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.85■□□□□ 0.61
LDLRP01130 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LDLRP01130 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
LDLRP01130 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LDLRP01130 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.84■□□□□ 0.61
LDLRP01130 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.84■□□□□ 0.61
LDLRP01130 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.84■□□□□ 0.61
LDLRP01130 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
LDLRP01130 TREX1-205ENST00000625293 1783 ntBASIC18.84■□□□□ 0.61
LDLRP01130 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.84■□□□□ 0.61
LDLRP01130 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
LDLRP01130 FAM210CP-201ENST00000445714 574 ntBASIC18.84■□□□□ 0.61
LDLRP01130 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.84■□□□□ 0.61
LDLRP01130 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.84■□□□□ 0.61
LDLRP01130 AC073912.3-201ENST00000624414 853 ntBASIC18.84■□□□□ 0.61
LDLRP01130 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LDLRP01130 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LDLRP01130 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.83■□□□□ 0.61
LDLRP01130 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
LDLRP01130 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDLRP01130 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDLRP01130 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.83■□□□□ 0.61
LDLRP01130 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LDLRP01130 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.83■□□□□ 0.61
LDLRP01130 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.83■□□□□ 0.61
LDLRP01130 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDLRP01130 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDLRP01130 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.83■□□□□ 0.61
LDLRP01130 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
LDLRP01130 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms