Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SNX3O60493 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SNX3O60493 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.3■□□□□ 0.68
SNX3O60493 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.3■□□□□ 0.68
SNX3O60493 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
SNX3O60493 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SNX3O60493 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.3■□□□□ 0.68
SNX3O60493 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
SNX3O60493 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.3■□□□□ 0.68
SNX3O60493 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 TPRG1LP1-201ENST00000598702 760 ntBASIC19.3■□□□□ 0.68
SNX3O60493 AL358852.1-201ENST00000623174 1268 ntBASIC19.3■□□□□ 0.68
SNX3O60493 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.3■□□□□ 0.68
SNX3O60493 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX3O60493 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX3O60493 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX3O60493 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.3■□□□□ 0.68
SNX3O60493 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SNX3O60493 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SNX3O60493 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SNX3O60493 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SNX3O60493 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.29■□□□□ 0.68
SNX3O60493 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.29■□□□□ 0.68
SNX3O60493 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SNX3O60493 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SNX3O60493 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SNX3O60493 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SNX3O60493 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SNX3O60493 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.29■□□□□ 0.68
SNX3O60493 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.29■□□□□ 0.68
SNX3O60493 AC010141.2-201ENST00000452426 721 ntBASIC19.29■□□□□ 0.68
SNX3O60493 SLC7A5P2-201ENST00000553010 536 ntBASIC19.29■□□□□ 0.68
SNX3O60493 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.29■□□□□ 0.68
SNX3O60493 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.29■□□□□ 0.68
SNX3O60493 AL356652.1-201ENST00000615962 565 ntBASIC19.29■□□□□ 0.68
SNX3O60493 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.29■□□□□ 0.68
SNX3O60493 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.29■□□□□ 0.68
SNX3O60493 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 AC067852.2-201ENST00000590513 2313 ntBASIC19.29■□□□□ 0.68
SNX3O60493 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.29■□□□□ 0.68
SNX3O60493 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SNX3O60493 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.28■□□□□ 0.68
SNX3O60493 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.28■□□□□ 0.68
SNX3O60493 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.28■□□□□ 0.68
SNX3O60493 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 MIR572-201ENST00000384983 95 ntBASIC19.28■□□□□ 0.68
SNX3O60493 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.28■□□□□ 0.68
SNX3O60493 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.28■□□□□ 0.68
SNX3O60493 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SNX3O60493 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
SNX3O60493 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.28■□□□□ 0.68
SNX3O60493 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.28■□□□□ 0.68
SNX3O60493 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.28■□□□□ 0.68
SNX3O60493 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SNX3O60493 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.27■□□□□ 0.68
SNX3O60493 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.27■□□□□ 0.68
SNX3O60493 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SNX3O60493 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SNX3O60493 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.27■□□□□ 0.68
SNX3O60493 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.27■□□□□ 0.68
SNX3O60493 AC243732.1-201ENST00000612648 864 ntBASIC19.27■□□□□ 0.68
SNX3O60493 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.27■□□□□ 0.68
SNX3O60493 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms