Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC11O43248 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
HOXC11O43248 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
HOXC11O43248 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC11O43248 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
HOXC11O43248 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
HOXC11O43248 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC11O43248 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC11O43248 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC11O43248 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.98■□□□□ 0.79
HOXC11O43248 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.98■□□□□ 0.79
HOXC11O43248 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 EGLN1P1-201ENST00000531623 762 ntBASIC19.98■□□□□ 0.79
HOXC11O43248 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC11O43248 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 AC011298.2-201ENST00000617989 482 ntBASIC19.98■□□□□ 0.79
HOXC11O43248 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC11O43248 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HOXC11O43248 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.98■□□□□ 0.79
HOXC11O43248 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.98■□□□□ 0.79
HOXC11O43248 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HOXC11O43248 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 TSPY14P-201ENST00000303979 915 ntBASIC19.97■□□□□ 0.79
HOXC11O43248 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 CRYGFP-201ENST00000418459 633 ntBASIC19.97■□□□□ 0.79
HOXC11O43248 SLC25A3P1-201ENST00000443844 931 ntBASIC19.97■□□□□ 0.79
HOXC11O43248 AC008040.2-201ENST00000461049 708 ntBASIC19.97■□□□□ 0.79
HOXC11O43248 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HOXC11O43248 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.97■□□□□ 0.79
HOXC11O43248 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
HOXC11O43248 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
HOXC11O43248 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.97■□□□□ 0.79
HOXC11O43248 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HOXC11O43248 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC11O43248 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
HOXC11O43248 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 TERF1P1-201ENST00000311003 1181 ntBASIC19.96■□□□□ 0.79
HOXC11O43248 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC11O43248 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.96■□□□□ 0.79
HOXC11O43248 Z85996.1-201ENST00000494644 937 ntBASIC19.96■□□□□ 0.79
HOXC11O43248 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.96■□□□□ 0.79
HOXC11O43248 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HOXC11O43248 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC11O43248 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 AL162377.1-201ENST00000618844 1793 ntBASIC19.95■□□□□ 0.78
HOXC11O43248 FEM1AP1-201ENST00000431297 1995 ntBASIC19.95■□□□□ 0.78
HOXC11O43248 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HOXC11O43248 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 AC073508.3-201ENST00000619697 1419 ntBASIC19.95■□□□□ 0.78
HOXC11O43248 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.95■□□□□ 0.78
HOXC11O43248 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
HOXC11O43248 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
HOXC11O43248 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
HOXC11O43248 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
HOXC11O43248 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HOXC11O43248 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.95■□□□□ 0.78
HOXC11O43248 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
HOXC11O43248 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.95■□□□□ 0.78
HOXC11O43248 AL512408.1-201ENST00000569378 2000 ntBASIC19.95■□□□□ 0.78
HOXC11O43248 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 AC096733.2-201ENST00000609937 1394 ntBASIC19.95■□□□□ 0.78
HOXC11O43248 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HOXC11O43248 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.94■□□□□ 0.78
HOXC11O43248 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
HOXC11O43248 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
HOXC11O43248 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.94■□□□□ 0.78
HOXC11O43248 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms