Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.6□□□□□ -1.83
PRKDCP78527 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 HMGB1P4-201ENST00000455362 567 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 AC023043.4-201ENST00000612081 449 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 AC015722.2-201ENST00000622210 551 ntBASIC3.6□□□□□ -1.83
PRKDCP78527 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
PRKDCP78527 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 RGPD2-201ENST00000398146 6931 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
PRKDCP78527 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
PRKDCP78527 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 WDR87-201ENST00000303868 8847 ntAPPRIS P3 TSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
PRKDCP78527 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.59□□□□□ -1.83
PRKDCP78527 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC3.59□□□□□ -1.83
PRKDCP78527 AC016550.3-201ENST00000515706 767 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 AC005252.1-201ENST00000604518 1063 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.59□□□□□ -1.83
PRKDCP78527 AL049536.1-201ENST00000625043 744 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 PRDM10-201ENST00000304538 5817 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 SPATA13-201ENST00000343003 6405 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 SPEN-201ENST00000375759 12232 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 OR1D2-203ENST00000641833 4887 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
PRKDCP78527 ZNF236-201ENST00000253159 8124 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 MAST4-204ENST00000405643 7713 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
PRKDCP78527 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC3.59□□□□□ -1.83
PRKDCP78527 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 RN7SL303P-201ENST00000469773 251 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 GLUD1P3-202ENST00000508551 200 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 FTH1P21-201ENST00000512179 511 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 EIF1P5-201ENST00000585002 234 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 COL6A4P1-202ENST00000487147 4317 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 MEGF10-201ENST00000274473 7594 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 DMBT1-203ENST00000344338 7656 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 DMBT1-205ENST00000368955 7656 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
PRKDCP78527 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 COL12A1-207ENST00000483888 9637 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 AC116036.1-201ENST00000412199 367 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 ACTR3P2-201ENST00000439585 1257 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 IGHV5-78-201ENST00000450948 295 ntBASIC3.59□□□□□ -1.83
PRKDCP78527 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.59□□□□□ -1.83
PRKDCP78527 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC3.59□□□□□ -1.83
PRKDCP78527 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
PRKDCP78527 HSPD1P8-201ENST00000400121 1658 ntBASIC3.59□□□□□ -1.84
PRKDCP78527 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC3.59□□□□□ -1.84
PRKDCP78527 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.84
PRKDCP78527 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC3.59□□□□□ -1.84
PRKDCP78527 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC3.59□□□□□ -1.84
PRKDCP78527 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PRKDCP78527 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.84
PRKDCP78527 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
PRKDCP78527 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
PRKDCP78527 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC3.59□□□□□ -1.84
PRKDCP78527 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.84
PRKDCP78527 AL445687.2-201ENST00000458156 728 ntBASIC3.59□□□□□ -1.84
PRKDCP78527 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.59□□□□□ -1.84
PRKDCP78527 AC122688.1-201ENST00000541494 223 ntBASIC3.59□□□□□ -1.84
PRKDCP78527 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
PRKDCP78527 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
PRKDCP78527 AP001885.1-201ENST00000621658 558 ntBASIC3.59□□□□□ -1.84
PRKDCP78527 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.59□□□□□ -1.84
PRKDCP78527 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
PRKDCP78527 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.58□□□□□ -1.84
PRKDCP78527 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
PRKDCP78527 CENPC-201ENST00000273853 6940 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
PRKDCP78527 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
PRKDCP78527 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.58□□□□□ -1.84
PRKDCP78527 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
PRKDCP78527 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
PRKDCP78527 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC3.58□□□□□ -1.84
PRKDCP78527 AL672167.2-201ENST00000377164 879 ntBASIC3.58□□□□□ -1.84
PRKDCP78527 OR8V1P-201ENST00000395193 873 ntBASIC3.58□□□□□ -1.84
PRKDCP78527 PPIAP31-201ENST00000405422 495 ntBASIC3.58□□□□□ -1.84
PRKDCP78527 RN7SKP202-201ENST00000410439 330 ntBASIC3.58□□□□□ -1.84
PRKDCP78527 AC016027.5-201ENST00000427227 210 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms