RNA–Protein interactions for RNA: ENST00000436786.1

LINC01239-202, Transcript of long intergenic non-protein coding RNA 1239, humanhuman

TSL 2 BASIC

Gene LINC01239, Length 2,347 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01239-202ENST00000436786 AEBP2Q6ZN18 517 aaPredicted RBP15.07■□□□□ 0
LINC01239-202ENST00000436786 CHIC1Q5VXU3 224 aa14.38□□□□□ -0.11
LINC01239-202ENST00000436786 SENP3Q9H4L4 574 aaPredicted RBP13.25□□□□□ -0.29
LINC01239-202ENST00000436786 PHF23Q9BUL5 403 aaPredicted RBP12.85□□□□□ -0.35
LINC01239-202ENST00000436786 POTEDQ86YR6 584 aa12.77□□□□□ -0.37
LINC01239-202ENST00000436786 FOXD1Q16676 465 aa12.26□□□□□ -0.45
LINC01239-202ENST00000436786 MSH5O43196 834 aa11.99□□□□□ -0.49
LINC01239-202ENST00000436786 PIAS4Q8N2W9 510 aaPredicted RBP11.35□□□□□ -0.59
LINC01239-202ENST00000436786 NISCHQ9Y2I1 1504 aa11.1□□□□□ -0.63
LINC01239-202ENST00000436786 PPP6R1Q9UPN7 881 aa10.77□□□□□ -0.69
LINC01239-202ENST00000436786 PLPPR3Q6T4P5 718 aa10.75□□□□□ -0.69
LINC01239-202ENST00000436786 ADRA2BP18089 450 aa10.75□□□□□ -0.69
LINC01239-202ENST00000436786 CACNB1Q02641 598 aaPredicted RBP10.67□□□□□ -0.7
LINC01239-202ENST00000436786 DMRT2Q9Y5R5 561 aa10.33□□□□□ -0.76
LINC01239-202ENST00000436786 SCAF1Q9H7N4 1312 aaKnown RBP10.17□□□□□ -0.78
LINC01239-202ENST00000436786 MAPK8IP2Q13387 824 aaPredicted RBP10.05□□□□□ -0.8
LINC01239-202ENST00000436786 ABCC9O60706 1549 aa10.03□□□□□ -0.8
LINC01239-202ENST00000436786 RNF39Q9H2S5 420 aa10.02□□□□□ -0.81
LINC01239-202ENST00000436786 C1QBPQ07021 282 aaKnown RBP9.95□□□□□ -0.82
LINC01239-202ENST00000436786 CCDC180Q9P1Z9 1646 aa9.95□□□□□ -0.82
LINC01239-202ENST00000436786 DCAF8L1A6NGE4 600 aa9.93□□□□□ -0.82
LINC01239-202ENST00000436786 POTEHQ6S545 545 aa9.9□□□□□ -0.82
LINC01239-202ENST00000436786 HOXD11P31277 338 aaPredicted RBP9.66□□□□□ -0.86
LINC01239-202ENST00000436786 DNAJC5BQ9UF47 199 aa9.64□□□□□ -0.87
LINC01239-202ENST00000436786 RB1CC1Q8TDY2 1594 aa9.5□□□□□ -0.89
LINC01239-202ENST00000436786 DCAF8L2P0C7V8 631 aa9.43□□□□□ -0.9
LINC01239-202ENST00000436786 RNF216Q9NWF9 866 aaPredicted RBP9.43□□□□□ -0.9
LINC01239-202ENST00000436786 NACADO15069 1562 aa9.43□□□□□ -0.9
LINC01239-202ENST00000436786 PABPN1Q86U42 306 aaKnown RBP eCLIP9.36□□□□□ -0.91
LINC01239-202ENST00000436786 CNKSR2Q8WXI2 1034 aa9.33□□□□□ -0.92
LINC01239-202ENST00000436786 MYO15BQ96JP2 1530 aa9.28□□□□□ -0.92
LINC01239-202ENST00000436786 UNC13AQ9UPW8 1703 aa9.27□□□□□ -0.93
LINC01239-202ENST00000436786 PPP4R3CPQ6ZMV5 832 aa9.25□□□□□ -0.93
LINC01239-202ENST00000436786 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.25□□□□□ -0.93
LINC01239-202ENST00000436786 BICRAQ9NZM4 1560 aa9.24□□□□□ -0.93
LINC01239-202ENST00000436786 ZCCHC6Q5VYS8 1495 aaKnown RBP9.19□□□□□ -0.94
LINC01239-202ENST00000436786 DCAF1Q9Y4B6 1507 aa9.15□□□□□ -0.94
LINC01239-202ENST00000436786 DSG3P32926 999 aa9.1□□□□□ -0.95
LINC01239-202ENST00000436786 SCRIBQ14160 1630 aa9.09□□□□□ -0.95
LINC01239-202ENST00000436786 SHROOM4Q9ULL8 1493 aa9.08□□□□□ -0.96
LINC01239-202ENST00000436786 CAPN15O75808 1086 aa9.05□□□□□ -0.96
LINC01239-202ENST00000436786 CC2D2AQ9P2K1 1620 aa9.04□□□□□ -0.96
LINC01239-202ENST00000436786 CECR2Q9BXF3 1484 aa9.03□□□□□ -0.96
LINC01239-202ENST00000436786 EIF4G1Q04637 1599 aaKnown RBP9.01□□□□□ -0.97
LINC01239-202ENST00000436786 SP7Q8TDD2 431 aaPredicted RBP8.97□□□□□ -0.97
LINC01239-202ENST00000436786 RBM42Q9BTD8 480 aaKnown RBP8.93□□□□□ -0.98
LINC01239-202ENST00000436786 APLP2Q06481 763 aa8.9□□□□□ -0.98
LINC01239-202ENST00000436786 SPINK5Q9NQ38 1064 aaPredicted RBP8.87□□□□□ -0.99
LINC01239-202ENST00000436786 NCBP3Q53F19 620 aaKnown RBP8.86□□□□□ -0.99
LINC01239-202ENST00000436786 CHRDL2Q6WN34 429 aa8.86□□□□□ -0.99
LINC01239-202ENST00000436786 U3KPZ7 1027 aaPredicted RBP8.84□□□□□ -0.99
LINC01239-202ENST00000436786 ZNF219Q9P2Y4 722 aaPredicted RBP8.78□□□□□ -1
LINC01239-202ENST00000436786 NCAPD3P42695 1498 aa8.72□□□□□ -1.01
LINC01239-202ENST00000436786 DNAJC5Q9H3Z4 198 aa8.71□□□□□ -1.02
LINC01239-202ENST00000436786 ATAD2BQ9ULI0 1458 aa8.69□□□□□ -1.02
LINC01239-202ENST00000436786 TRHP20396 242 aaPredicted RBP8.68□□□□□ -1.02
LINC01239-202ENST00000436786 ABCB7O75027 752 aa8.66□□□□□ -1.02
LINC01239-202ENST00000436786 SMARCA4P51532 1647 aa8.66□□□□□ -1.02
LINC01239-202ENST00000436786 SMARCA2P51531 1590 aa8.65□□□□□ -1.03
LINC01239-202ENST00000436786 ERCC6Q03468 1493 aa8.65□□□□□ -1.03
LINC01239-202ENST00000436786 HMGXB3Q12766 1538 aa8.63□□□□□ -1.03
LINC01239-202ENST00000436786 CUX2O14529 1486 aa8.63□□□□□ -1.03
LINC01239-202ENST00000436786 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.62□□□□□ -1.03
LINC01239-202ENST00000436786 HNRNPUL2Q1KMD3 747 aaKnown RBP8.62□□□□□ -1.03
LINC01239-202ENST00000436786 BAZ1AQ9NRL2 1556 aaPredicted RBP8.61□□□□□ -1.03
LINC01239-202ENST00000436786 NESP48681 1621 aa8.61□□□□□ -1.03
LINC01239-202ENST00000436786 BAZ1BQ9UIG0 1483 aaKnown RBP8.6□□□□□ -1.03
LINC01239-202ENST00000436786 PEG3Q9GZU2 1588 aa8.57□□□□□ -1.04
LINC01239-202ENST00000436786 MROH2BQ7Z745 1585 aa8.56□□□□□ -1.04
LINC01239-202ENST00000436786 HAX1O00165 279 aa8.55□□□□□ -1.04
LINC01239-202ENST00000436786 LAMC3Q9Y6N6 1575 aa8.51□□□□□ -1.05
LINC01239-202ENST00000436786 THOC2Q8NI27 1593 aaKnown RBP8.5□□□□□ -1.05
LINC01239-202ENST00000436786 AKT1S1Q96B36 256 aa8.49□□□□□ -1.05
LINC01239-202ENST00000436786 NPM3O75607 178 aaKnown RBP8.49□□□□□ -1.05
LINC01239-202ENST00000436786 PDS5BQ9NTI5 1447 aa8.48□□□□□ -1.05
LINC01239-202ENST00000436786 SAMD1Q6SPF0 538 aaPredicted RBP8.46□□□□□ -1.05
LINC01239-202ENST00000436786 PLSCR2Q9NRY7 297 aa8.46□□□□□ -1.05
LINC01239-202ENST00000436786 CADPSQ9ULU8 1353 aa8.46□□□□□ -1.05
LINC01239-202ENST00000436786 KIF21AQ7Z4S6 1674 aa8.46□□□□□ -1.05
LINC01239-202ENST00000436786 WIZO95785 1651 aa8.45□□□□□ -1.06
LINC01239-202ENST00000436786 PIP4P2Q8N4L2 257 aa8.45□□□□□ -1.06
LINC01239-202ENST00000436786 MRC2Q9UBG0 1479 aa8.4□□□□□ -1.06
LINC01239-202ENST00000436786 LHX8Q68G74 356 aa8.4□□□□□ -1.06
LINC01239-202ENST00000436786 WDR62O43379 1518 aa8.38□□□□□ -1.07
LINC01239-202ENST00000436786 RSF1Q96T23 1441 aaPredicted RBP8.38□□□□□ -1.07
LINC01239-202ENST00000436786 FANCD2Q9BXW9 1451 aa8.36□□□□□ -1.07
LINC01239-202ENST00000436786 CEP164Q9UPV0 1460 aa8.36□□□□□ -1.07
LINC01239-202ENST00000436786 CFTRP13569 1480 aa8.35□□□□□ -1.07
LINC01239-202ENST00000436786 TOP2AP11388 1531 aaKnown RBP8.34□□□□□ -1.07
LINC01239-202ENST00000436786 FXR2P51116 673 aaKnown RBP eCLIP8.32□□□□□ -1.08
LINC01239-202ENST00000436786 TRIM41Q8WV44 630 aa8.32□□□□□ -1.08
LINC01239-202ENST00000436786 REM2Q8IYK8 340 aaPredicted RBP8.31□□□□□ -1.08
LINC01239-202ENST00000436786 URB2Q14146 1524 aaKnown RBP8.3□□□□□ -1.08
LINC01239-202ENST00000436786 ZBTB12Q9Y330 459 aaPredicted RBP8.29□□□□□ -1.08
LINC01239-202ENST00000436786 CCDC88BA6NC98 1476 aa8.27□□□□□ -1.09
LINC01239-202ENST00000436786 POLA2Q14181 598 aa8.26□□□□□ -1.09
LINC01239-202ENST00000436786 OSCARQ8IYS5 282 aa8.26□□□□□ -1.09
LINC01239-202ENST00000436786 SLC4A2P04920 1241 aa8.24□□□□□ -1.09
LINC01239-202ENST00000436786 PRDM2Q13029 1718 aa8.21□□□□□ -1.09
LINC01239-202ENST00000436786 ZNF608Q9ULD9 1512 aaPredicted RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms