Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC003985.2-201ENST00000562268 1669 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 AP005432.1-201ENST00000580891 3485 ntBASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HDDC3Q8N4P3 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC068870.3-201ENST00000625077 2536 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 MIR550A3-201ENST00000390735 95 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC005042.1-201ENST00000393397 800 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 RN7SKP279-201ENST00000411383 298 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AL139128.1-201ENST00000413921 941 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 VN1R21P-201ENST00000426703 765 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC019185.1-201ENST00000442718 389 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC091685.2-201ENST00000454924 864 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 RPS4XP1-201ENST00000482189 787 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AGGF1P7-201ENST00000562369 913 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC073575.2-201ENST00000614212 627 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC074140.1-201ENST00000621617 208 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 AC097063.1-201ENST00000426714 1797 ntBASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
HDDC3Q8N4P3 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC103591.2-201ENST00000265259 766 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 CRIP1P1-201ENST00000427567 185 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 H2AFZP6-201ENST00000444403 394 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 VDAC2P4-201ENST00000452925 711 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 RPL7AP6-201ENST00000477943 801 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC090638.1-201ENST00000498296 909 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 CCNHP1-201ENST00000513311 678 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 RN7SKP99-201ENST00000517028 307 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 OR4A46P-201ENST00000527255 933 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 SNORD39.2-201ENST00000579995 76 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC006115.2-201ENST00000596823 202 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AC104785.1-201ENST00000603220 588 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 OR7M1P-201ENST00000608946 533 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AL031658.2-201ENST00000616850 651 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 AP001284.1-201ENST00000528393 2118 ntBASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
HDDC3Q8N4P3 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms