RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 PELP1Q8IZL8 1130 aaKnown RBP9.33□□□□□ -0.92
CSMD1-215ENST00000537824 MYT1Q01538 1121 aa9.26□□□□□ -0.93
CSMD1-215ENST00000537824 ERICH6Q7L0X2 663 aa8.98□□□□□ -0.97
CSMD1-215ENST00000537824 CENPBP07199 599 aaPredicted RBP8.92□□□□□ -0.98
CSMD1-215ENST00000537824 DCAF8L2P0C7V8 631 aa8.9□□□□□ -0.98
CSMD1-215ENST00000537824 SUPT5HO00267 1087 aaKnown RBP8.88□□□□□ -0.99
CSMD1-215ENST00000537824 PCGF6Q9BYE7 350 aa8.86□□□□□ -0.99
CSMD1-215ENST00000537824 CCER1Q8TC90 406 aaPredicted RBP8.82□□□□□ -1
CSMD1-215ENST00000537824 EHMT2Q96KQ7 1210 aa8.79□□□□□ -1
CSMD1-215ENST00000537824 ZEB1P37275 1124 aaPredicted RBP8.7□□□□□ -1.02
CSMD1-215ENST00000537824 YTHDC1Q96MU7 727 aaKnown RBP8.69□□□□□ -1.02
CSMD1-215ENST00000537824 TTBK1Q5TCY1 1321 aaPredicted RBP8.69□□□□□ -1.02
CSMD1-215ENST00000537824 NEFLP07196 543 aa8.67□□□□□ -1.02
CSMD1-215ENST00000537824 SHROOM4Q9ULL8 1493 aa8.65□□□□□ -1.02
CSMD1-215ENST00000537824 HRCP23327 699 aa8.53□□□□□ -1.04
CSMD1-215ENST00000537824 APLP2Q06481 763 aa8.51□□□□□ -1.05
CSMD1-215ENST00000537824 FAM9AQ8IZU1 332 aaPredicted RBP8.43□□□□□ -1.06
CSMD1-215ENST00000537824 DAXXQ9UER7 740 aaPredicted RBP8.42□□□□□ -1.06
CSMD1-215ENST00000537824 RTL5Q5HYW3 569 aaPredicted RBP8.4□□□□□ -1.06
CSMD1-215ENST00000537824 PPARGC1BQ86YN6 1023 aaKnown RBP8.39□□□□□ -1.07
CSMD1-215ENST00000537824 GTF3C3Q9Y5Q9 886 aa8.28□□□□□ -1.08
CSMD1-215ENST00000537824 TRIM26Q12899 539 aaPredicted RBP8.28□□□□□ -1.08
CSMD1-215ENST00000537824 NISCHQ9Y2I1 1504 aa8.28□□□□□ -1.08
CSMD1-215ENST00000537824 ZNF316A6NFI3 1004 aaPredicted RBP8.25□□□□□ -1.09
CSMD1-215ENST00000537824 RANGAP1P46060 587 aaPredicted RBP8.22□□□□□ -1.09
CSMD1-215ENST00000537824 DIEXFQ68CQ4 756 aaKnown RBP8.22□□□□□ -1.09
CSMD1-215ENST00000537824 EIF5BO60841 1220 aaKnown RBP8.22□□□□□ -1.09
CSMD1-215ENST00000537824 BCANQ96GW7 911 aa8.21□□□□□ -1.1
CSMD1-215ENST00000537824 ACIN1Q9UKV3 1341 aaKnown RBP8.14□□□□□ -1.11
CSMD1-215ENST00000537824 GLIPR1L2Q4G1C9 344 aa8.14□□□□□ -1.11
CSMD1-215ENST00000537824 TRIM41Q8WV44 630 aa8.13□□□□□ -1.11
CSMD1-215ENST00000537824 UBTFP17480 764 aaKnown RBP8.11□□□□□ -1.11
CSMD1-215ENST00000537824 CDK11AQ9UQ88 783 aaPredicted RBP8.11□□□□□ -1.11
CSMD1-215ENST00000537824 CLSPNQ9HAW4 1339 aa8.08□□□□□ -1.12
CSMD1-215ENST00000537824 POLR3GLQ9BT43 218 aa8.08□□□□□ -1.12
CSMD1-215ENST00000537824 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.06□□□□□ -1.12
CSMD1-215ENST00000537824 ATP1B4Q9UN42 357 aaPredicted RBP8.06□□□□□ -1.12
CSMD1-215ENST00000537824 CNGB1Q14028 1251 aaPredicted RBP8.05□□□□□ -1.12
CSMD1-215ENST00000537824 SCAF1Q9H7N4 1312 aaKnown RBP8.04□□□□□ -1.12
CSMD1-215ENST00000537824 HNRNPUL2Q1KMD3 747 aaKnown RBP8.02□□□□□ -1.13
CSMD1-215ENST00000537824 LOC105371045A0A1W2PR82 267 aa8.02□□□□□ -1.13
CSMD1-215ENST00000537824 ANP32AP39687 249 aaKnown RBP8□□□□□ -1.13
CSMD1-215ENST00000537824 BCL11AQ9H165 835 aa7.99□□□□□ -1.13
CSMD1-215ENST00000537824 MYT1LQ9UL68 1186 aa7.98□□□□□ -1.13
CSMD1-215ENST00000537824 NBR1Q14596 966 aa7.98□□□□□ -1.13
CSMD1-215ENST00000537824 ITGAEP38570 1179 aa7.97□□□□□ -1.13
CSMD1-215ENST00000537824 NPM2Q86SE8 214 aaKnown RBP7.96□□□□□ -1.13
CSMD1-215ENST00000537824 NEUROD1Q13562 356 aa7.9□□□□□ -1.14
CSMD1-215ENST00000537824 CHIC1Q5VXU3 224 aa7.89□□□□□ -1.15
CSMD1-215ENST00000537824 ANP32EQ9BTT0 268 aa7.88□□□□□ -1.15
CSMD1-215ENST00000537824 ANP32CO43423 234 aa7.86□□□□□ -1.15
CSMD1-215ENST00000537824 FKBP8Q14318 412 aa7.86□□□□□ -1.15
CSMD1-215ENST00000537824 ARXQ96QS3 562 aa7.85□□□□□ -1.15
CSMD1-215ENST00000537824 ANP32BQ92688 251 aaKnown RBP7.84□□□□□ -1.15
CSMD1-215ENST00000537824 RTN4Q9NQC3 1192 aaKnown RBP7.82□□□□□ -1.16
CSMD1-215ENST00000537824 TNNT2P45379 298 aaPredicted RBP7.8□□□□□ -1.16
CSMD1-215ENST00000537824 ZBTB47Q9UFB7 747 aaPredicted RBP7.79□□□□□ -1.16
CSMD1-215ENST00000537824 CANXP27824 592 aaKnown RBP7.78□□□□□ -1.16
CSMD1-215ENST00000537824 SLC4A1APQ9BWU0 796 aaKnown RBP7.77□□□□□ -1.16
CSMD1-215ENST00000537824 GON4LQ3T8J9 2241 aa7.76□□□□□ -1.17
CSMD1-215ENST00000537824 NAP1L5Q96NT1 182 aaPredicted RBP7.74□□□□□ -1.17
CSMD1-215ENST00000537824 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.74□□□□□ -1.17
CSMD1-215ENST00000537824 HSP90AA1P07900 732 aaKnown RBP7.73□□□□□ -1.17
CSMD1-215ENST00000537824 NEFMP07197 916 aa7.7□□□□□ -1.18
CSMD1-215ENST00000537824 ERICH6BQ5W0A0 696 aa7.7□□□□□ -1.18
CSMD1-215ENST00000537824 CCDC180Q9P1Z9 1646 aa7.7□□□□□ -1.18
CSMD1-215ENST00000537824 IRX6P78412 446 aaPredicted RBP7.7□□□□□ -1.18
CSMD1-215ENST00000537824 DEKP35659 375 aaKnown RBP7.69□□□□□ -1.18
CSMD1-215ENST00000537824 FAM50AQ14320 339 aaKnown RBP7.69□□□□□ -1.18
CSMD1-215ENST00000537824 DCAF1Q9Y4B6 1507 aa7.68□□□□□ -1.18
CSMD1-215ENST00000537824 CCDC136Q96JN2 1154 aa7.68□□□□□ -1.18
CSMD1-215ENST00000537824 UPF2Q9HAU5 1272 aaKnown RBP7.67□□□□□ -1.18
CSMD1-215ENST00000537824 CDK11BP21127 795 aaKnown RBP7.66□□□□□ -1.18
CSMD1-215ENST00000537824 AMER1Q5JTC6 1135 aaPredicted RBP7.66□□□□□ -1.18
CSMD1-215ENST00000537824 HNRNPUQ00839 825 aaKnown RBP eCLIP7.66□□□□□ -1.18
CSMD1-215ENST00000537824 MIER1Q8N108 512 aa7.66□□□□□ -1.18
CSMD1-215ENST00000537824 ZNF326Q5BKZ1 582 aaKnown RBP7.66□□□□□ -1.18
CSMD1-215ENST00000537824 CSRNP3Q8WYN3 585 aa7.65□□□□□ -1.18
CSMD1-215ENST00000537824 LAS1LQ9Y4W2 734 aaKnown RBP7.65□□□□□ -1.18
CSMD1-215ENST00000537824 TRIM44Q96DX7 344 aaPredicted RBP7.63□□□□□ -1.19
CSMD1-215ENST00000537824 DDRGK1Q96HY6 314 aa7.62□□□□□ -1.19
CSMD1-215ENST00000537824 NOP58Q9Y2X3 529 aaKnown RBP7.62□□□□□ -1.19
CSMD1-215ENST00000537824 TRIM52Q96A61 297 aa7.62□□□□□ -1.19
CSMD1-215ENST00000537824 KAT6BQ8WYB5 2073 aa7.61□□□□□ -1.19
CSMD1-215ENST00000537824 ARID4BQ4LE39 1312 aaPredicted RBP7.59□□□□□ -1.19
CSMD1-215ENST00000537824 DDX10Q13206 875 aaKnown RBP7.59□□□□□ -1.19
CSMD1-215ENST00000537824 PTMAP06454 111 aaKnown RBP7.58□□□□□ -1.2
CSMD1-215ENST00000537824 BECN1Q14457 450 aa7.58□□□□□ -1.2
CSMD1-215ENST00000537824 FAM9BQ8IZU0 186 aa7.58□□□□□ -1.2
CSMD1-215ENST00000537824 NCLP19338 710 aaKnown RBP7.57□□□□□ -1.2
CSMD1-215ENST00000537824 PPM1GO15355 546 aaPredicted RBP7.55□□□□□ -1.2
CSMD1-215ENST00000537824 DNTTIP2Q5QJE6 756 aaKnown RBP7.54□□□□□ -1.2
CSMD1-215ENST00000537824 SUPT16HQ9Y5B9 1047 aaKnown RBP7.54□□□□□ -1.2
CSMD1-215ENST00000537824 ARID3AQ99856 593 aa7.53□□□□□ -1.2
CSMD1-215ENST00000537824 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.51□□□□□ -1.21
CSMD1-215ENST00000537824 SALL2Q9Y467 1007 aaPredicted RBP7.51□□□□□ -1.21
CSMD1-215ENST00000537824 SLC24A1O60721 1099 aa7.5□□□□□ -1.21
CSMD1-215ENST00000537824 PRKCSHP14314 528 aaPredicted RBP7.49□□□□□ -1.21
CSMD1-215ENST00000537824 TONSLQ96HA7 1378 aa7.48□□□□□ -1.21
CSMD1-215ENST00000537824 GOLGA6L22H0YM25 854 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms