Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 AL078621.3-201ENST00000623707 2042 ntBASIC4.81□□□□□ -1.64
CDX1P47902 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CDX1P47902 MIR433-201ENST00000384837 93 ntBASIC4.81□□□□□ -1.64
CDX1P47902 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 METTL15P3-201ENST00000415522 1221 ntBASIC4.81□□□□□ -1.64
CDX1P47902 RPS7P8-201ENST00000418311 581 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 PTP4A1P3-201ENST00000433661 420 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC110602.1-201ENST00000437414 318 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC002553.3-201ENST00000453002 341 ntBASIC4.81□□□□□ -1.64
CDX1P47902 PPIAP27-201ENST00000453800 265 ntBASIC4.81□□□□□ -1.64
CDX1P47902 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 LDHBP2-201ENST00000456969 1005 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC096741.1-201ENST00000472250 846 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 COX6B1P2-201ENST00000489624 230 ntBASIC4.81□□□□□ -1.64
CDX1P47902 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 snoU109.5-201ENST00000516231 132 ntBASIC4.81□□□□□ -1.64
CDX1P47902 Y_RNA.710-201ENST00000516975 110 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 AC005363.1-201ENST00000530779 351 ntBASIC4.81□□□□□ -1.64
CDX1P47902 RPA2P3-201ENST00000533268 770 ntBASIC4.81□□□□□ -1.64
CDX1P47902 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC4.81□□□□□ -1.64
CDX1P47902 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.81□□□□□ -1.64
CDX1P47902 AC233266.2-201ENST00000567067 528 ntBASIC4.81□□□□□ -1.64
CDX1P47902 ZNF322P1-201ENST00000568013 1209 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC007346.1-201ENST00000569208 867 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC4.81□□□□□ -1.64
CDX1P47902 LINC00907-202ENST00000585639 915 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC4.81□□□□□ -1.64
CDX1P47902 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 AL671309.1-201ENST00000603750 544 ntBASIC4.81□□□□□ -1.64
CDX1P47902 LAPTM4BP2-201ENST00000604542 446 ntBASIC4.81□□□□□ -1.64
CDX1P47902 RPL21P136-201ENST00000605378 396 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC004890.3-201ENST00000605566 1095 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC007786.3-201ENST00000615154 596 ntBASIC4.81□□□□□ -1.64
CDX1P47902 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 MIR1910-201ENST00000636955 80 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AC119674.1-212ENST00000641155 993 ntBASIC4.81□□□□□ -1.64
CDX1P47902 SAMMSON-209ENST00000641222 1100 ntBASIC4.81□□□□□ -1.64
CDX1P47902 AL133243.2-201ENST00000610331 1621 ntBASIC4.81□□□□□ -1.64
CDX1P47902 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.81□□□□□ -1.64
CDX1P47902 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.81□□□□□ -1.64
CDX1P47902 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDX1P47902 AL359715.4-201ENST00000606629 1436 ntBASIC4.8□□□□□ -1.64
CDX1P47902 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC4.8□□□□□ -1.64
CDX1P47902 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 AC239868.2-201ENST00000564237 4527 ntBASIC4.8□□□□□ -1.64
CDX1P47902 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.8□□□□□ -1.64
CDX1P47902 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 RNU1-134P-201ENST00000362935 165 ntBASIC4.8□□□□□ -1.64
CDX1P47902 RN7SKP275-201ENST00000364626 301 ntBASIC4.8□□□□□ -1.64
CDX1P47902 SNORA51.9-201ENST00000384295 124 ntBASIC4.8□□□□□ -1.64
CDX1P47902 RNU6-532P-201ENST00000384318 107 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AC004386.1-201ENST00000393214 761 ntBASIC4.8□□□□□ -1.64
CDX1P47902 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 OR7E156P-201ENST00000400303 464 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AL445238.1-204ENST00000400311 463 ntBASIC4.8□□□□□ -1.64
CDX1P47902 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 AL353692.2-201ENST00000407054 335 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 NMD3P2-201ENST00000421815 761 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 TRIM60P16-201ENST00000444048 694 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AC092967.1-201ENST00000449016 481 ntBASIC4.8□□□□□ -1.64
CDX1P47902 CFL1P4-201ENST00000451536 498 ntBASIC4.8□□□□□ -1.64
CDX1P47902 CBX1P2-201ENST00000453841 458 ntBASIC4.8□□□□□ -1.64
CDX1P47902 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms