RNA–Protein interactions for RNA: ENST00000433661.1

PTP4A1P3-201, Transcript of protein tyrosine phosphatase type IVA, member 1 pseudogene 3, humanhuman

BASIC

Gene PTP4A1P3, Length 420 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1P3-201ENST00000433661 CHIC1Q5VXU3 224 aa23.12■■□□□ 1.29
PTP4A1P3-201ENST00000433661 AEBP2Q6ZN18 517 aaPredicted RBP23.1■■□□□ 1.29
PTP4A1P3-201ENST00000433661 PHF23Q9BUL5 403 aaPredicted RBP20.33■□□□□ 0.85
PTP4A1P3-201ENST00000433661 SENP3Q9H4L4 574 aaPredicted RBP19.59■□□□□ 0.73
PTP4A1P3-201ENST00000433661 PLPPR3Q6T4P5 718 aa18.99■□□□□ 0.63
PTP4A1P3-201ENST00000433661 FOXD1Q16676 465 aa18.06■□□□□ 0.48
PTP4A1P3-201ENST00000433661 PPP6R1Q9UPN7 881 aa17.72■□□□□ 0.43
PTP4A1P3-201ENST00000433661 ADRA2BP18089 450 aa17.68■□□□□ 0.42
PTP4A1P3-201ENST00000433661 PIAS4Q8N2W9 510 aaPredicted RBP17.09■□□□□ 0.33
PTP4A1P3-201ENST00000433661 KCNA4P22459 653 aa16.86■□□□□ 0.29
PTP4A1P3-201ENST00000433661 PPP4R3CPQ6ZMV5 832 aa16.73■□□□□ 0.27
PTP4A1P3-201ENST00000433661 MSH5O43196 834 aa16.54■□□□□ 0.24
PTP4A1P3-201ENST00000433661 NCBP3Q53F19 620 aaKnown RBP16.48■□□□□ 0.23
PTP4A1P3-201ENST00000433661 SCAF1Q9H7N4 1312 aaKnown RBP16.31■□□□□ 0.2
PTP4A1P3-201ENST00000433661 CNKSR2Q8WXI2 1034 aa16.22■□□□□ 0.19
PTP4A1P3-201ENST00000433661 NPM3O75607 178 aaKnown RBP16.21■□□□□ 0.19
PTP4A1P3-201ENST00000433661 SLC4A1APQ9BWU0 796 aaKnown RBP16.15■□□□□ 0.18
PTP4A1P3-201ENST00000433661 EHMT2Q96KQ7 1210 aa16.1■□□□□ 0.17
PTP4A1P3-201ENST00000433661 DNAJC5BQ9UF47 199 aa16.01■□□□□ 0.15
PTP4A1P3-201ENST00000433661 CSRNP3Q8WYN3 585 aa15.88■□□□□ 0.13
PTP4A1P3-201ENST00000433661 MAPK8IP2Q13387 824 aaPredicted RBP15.87■□□□□ 0.13
PTP4A1P3-201ENST00000433661 RNF216Q9NWF9 866 aaPredicted RBP15.82■□□□□ 0.12
PTP4A1P3-201ENST00000433661 DMRT2Q9Y5R5 561 aa15.73■□□□□ 0.11
PTP4A1P3-201ENST00000433661 HOXD11P31277 338 aaPredicted RBP15.66■□□□□ 0.1
PTP4A1P3-201ENST00000433661 ZBTB22O15209 634 aa15.55■□□□□ 0.08
PTP4A1P3-201ENST00000433661 FOXD4L1Q9NU39 408 aa15.45■□□□□ 0.06
PTP4A1P3-201ENST00000433661 SLC4A2P04920 1241 aa15.2■□□□□ 0.02
PTP4A1P3-201ENST00000433661 MYCNP04198 464 aaPredicted RBP15.01□□□□□ -0.01
PTP4A1P3-201ENST00000433661 ATXN8OSP0DMR3 200 aa14.99□□□□□ -0.01
PTP4A1P3-201ENST00000433661 DCAF8L1A6NGE4 600 aa14.73□□□□□ -0.05
PTP4A1P3-201ENST00000433661 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.72□□□□□ -0.05
PTP4A1P3-201ENST00000433661 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.69□□□□□ -0.06
PTP4A1P3-201ENST00000433661 HNRNPUL2Q1KMD3 747 aaKnown RBP14.69□□□□□ -0.06
PTP4A1P3-201ENST00000433661 SAMD1Q6SPF0 538 aaPredicted RBP14.64□□□□□ -0.07
PTP4A1P3-201ENST00000433661 U3KPZ7 1027 aaPredicted RBP14.62□□□□□ -0.07
PTP4A1P3-201ENST00000433661 ATF5Q9Y2D1 282 aaPredicted RBP14.47□□□□□ -0.09
PTP4A1P3-201ENST00000433661 APLP2Q06481 763 aa14.41□□□□□ -0.1
PTP4A1P3-201ENST00000433661 FKBP8Q14318 412 aa14.23□□□□□ -0.13
PTP4A1P3-201ENST00000433661 ZNF219Q9P2Y4 722 aaPredicted RBP14.23□□□□□ -0.13
PTP4A1P3-201ENST00000433661 RNF39Q9H2S5 420 aa14.21□□□□□ -0.13
PTP4A1P3-201ENST00000433661 C1QBPQ07021 282 aaKnown RBP14.1□□□□□ -0.15
PTP4A1P3-201ENST00000433661 POTEDQ86YR6 584 aa14.1□□□□□ -0.15
PTP4A1P3-201ENST00000433661 SPINK5Q9NQ38 1064 aaPredicted RBP13.98□□□□□ -0.17
PTP4A1P3-201ENST00000433661 AMER1Q5JTC6 1135 aaPredicted RBP13.96□□□□□ -0.17
PTP4A1P3-201ENST00000433661 MKRN4PQ13434 485 aaPredicted RBP13.92□□□□□ -0.18
PTP4A1P3-201ENST00000433661 TRHP20396 242 aaPredicted RBP13.89□□□□□ -0.19
PTP4A1P3-201ENST00000433661 FBLN2P98095 1184 aa13.87□□□□□ -0.19
PTP4A1P3-201ENST00000433661 CAPN15O75808 1086 aa13.86□□□□□ -0.19
PTP4A1P3-201ENST00000433661 POLA2Q14181 598 aa13.86□□□□□ -0.19
PTP4A1P3-201ENST00000433661 PROM2Q8N271 834 aa13.86□□□□□ -0.19
PTP4A1P3-201ENST00000433661 RTN4Q9NQC3 1192 aaKnown RBP13.82□□□□□ -0.2
PTP4A1P3-201ENST00000433661 ZBTB12Q9Y330 459 aaPredicted RBP13.82□□□□□ -0.2
PTP4A1P3-201ENST00000433661 SPDYE4A6NLX3 237 aa13.81□□□□□ -0.2
PTP4A1P3-201ENST00000433661 FBXO3Q9UK99 471 aa13.73□□□□□ -0.21
PTP4A1P3-201ENST00000433661 DSG3P32926 999 aa13.65□□□□□ -0.22
PTP4A1P3-201ENST00000433661 ABCB7O75027 752 aa13.6□□□□□ -0.23
PTP4A1P3-201ENST00000433661 VASPP50552 380 aaPredicted RBP13.48□□□□□ -0.25
PTP4A1P3-201ENST00000433661 SPDYE2BA6NHP3 402 aa13.46□□□□□ -0.25
PTP4A1P3-201ENST00000433661 SPDYE6P0CI01 402 aa13.46□□□□□ -0.25
PTP4A1P3-201ENST00000433661 SPDYE2Q495Y8 402 aa13.46□□□□□ -0.25
PTP4A1P3-201ENST00000433661 SSUH2Q9Y2M2 353 aa13.44□□□□□ -0.26
PTP4A1P3-201ENST00000433661 OSCARQ8IYS5 282 aa13.36□□□□□ -0.27
PTP4A1P3-201ENST00000433661 ZNF692Q9BU19 519 aaPredicted RBP13.36□□□□□ -0.27
PTP4A1P3-201ENST00000433661 SLC24A1O60721 1099 aa13.33□□□□□ -0.28
PTP4A1P3-201ENST00000433661 CACNB1Q02641 598 aaPredicted RBP13.33□□□□□ -0.28
PTP4A1P3-201ENST00000433661 IFNLR1Q8IU57 520 aaPredicted RBP13.32□□□□□ -0.28
PTP4A1P3-201ENST00000433661 STAG3Q9UJ98 1225 aa13.31□□□□□ -0.28
PTP4A1P3-201ENST00000433661 PABPN1Q86U42 306 aaKnown RBP eCLIP13.2□□□□□ -0.3
PTP4A1P3-201ENST00000433661 PKD2Q13563 968 aa13.09□□□□□ -0.31
PTP4A1P3-201ENST00000433661 SPOCK2Q92563 424 aa13.09□□□□□ -0.31
PTP4A1P3-201ENST00000433661 RBM42Q9BTD8 480 aaKnown RBP13.04□□□□□ -0.32
PTP4A1P3-201ENST00000433661 PLCD3Q8N3E9 789 aa13.01□□□□□ -0.33
PTP4A1P3-201ENST00000433661 KLHL34Q8N239 644 aa12.99□□□□□ -0.33
PTP4A1P3-201ENST00000433661 ZBTB47Q9UFB7 747 aaPredicted RBP12.99□□□□□ -0.33
PTP4A1P3-201ENST00000433661 AKT1S1Q96B36 256 aa12.98□□□□□ -0.33
PTP4A1P3-201ENST00000433661 MIER1Q8N108 512 aa12.97□□□□□ -0.33
PTP4A1P3-201ENST00000433661 PLEKHG5O94827 1062 aa12.94□□□□□ -0.34
PTP4A1P3-201ENST00000433661 SPDYE1Q8NFV5 336 aaPredicted RBP12.9□□□□□ -0.34
PTP4A1P3-201ENST00000433661 PLCB2Q00722 1185 aa12.86□□□□□ -0.35
PTP4A1P3-201ENST00000433661 ECM2O94769 699 aaPredicted RBP12.83□□□□□ -0.36
PTP4A1P3-201ENST00000433661 TRIM41Q8WV44 630 aa12.83□□□□□ -0.36
PTP4A1P3-201ENST00000433661 REM2Q8IYK8 340 aaPredicted RBP12.79□□□□□ -0.36
PTP4A1P3-201ENST00000433661 NUBP1P53384 320 aa12.72□□□□□ -0.37
PTP4A1P3-201ENST00000433661 GSE1Q14687 1217 aa12.72□□□□□ -0.37
PTP4A1P3-201ENST00000433661 BBXQ8WY36 941 aaPredicted RBP12.72□□□□□ -0.37
PTP4A1P3-201ENST00000433661 RGL2O15211 777 aa12.71□□□□□ -0.37
PTP4A1P3-201ENST00000433661 DCAF8L2P0C7V8 631 aa12.71□□□□□ -0.37
PTP4A1P3-201ENST00000433661 MNX1P50219 401 aaPredicted RBP12.71□□□□□ -0.37
PTP4A1P3-201ENST00000433661 CREBZFQ9NS37 354 aa12.71□□□□□ -0.37
PTP4A1P3-201ENST00000433661 PRR29P0C7W0 189 aa12.7□□□□□ -0.38
PTP4A1P3-201ENST00000433661 CIZ1Q9ULV3 898 aaPredicted RBP12.66□□□□□ -0.38
PTP4A1P3-201ENST00000433661 NPM1P06748 294 aaKnown RBP eCLIP12.64□□□□□ -0.39
PTP4A1P3-201ENST00000433661 CLEC11AQ9Y240 323 aa12.64□□□□□ -0.39
PTP4A1P3-201ENST00000433661 PITPNM1O00562 1244 aa12.62□□□□□ -0.39
PTP4A1P3-201ENST00000433661 DNAJC5Q9H3Z4 198 aa12.62□□□□□ -0.39
PTP4A1P3-201ENST00000433661 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.62□□□□□ -0.39
PTP4A1P3-201ENST00000433661 CHRM1P11229 460 aaPredicted RBP12.59□□□□□ -0.39
PTP4A1P3-201ENST00000433661 FAM212AQ96EL1 285 aa12.56□□□□□ -0.4
PTP4A1P3-201ENST00000433661 HS6ST3Q8IZP7 471 aa12.55□□□□□ -0.4
PTP4A1P3-201ENST00000433661 VSIG10Q8N0Z9 540 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 247.1 ms