RNA–Protein interactions for RNA: ENST00000395727.6

PTPN20-208, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 790 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-208ENST00000395727 AEBP2Q6ZN18 517 aaPredicted RBP21.06■□□□□ 0.96
PTPN20-208ENST00000395727 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
PTPN20-208ENST00000395727 PHF23Q9BUL5 403 aaPredicted RBP18.15■□□□□ 0.5
PTPN20-208ENST00000395727 SENP3Q9H4L4 574 aaPredicted RBP17.84■□□□□ 0.45
PTPN20-208ENST00000395727 PLPPR3Q6T4P5 718 aa16.73■□□□□ 0.27
PTPN20-208ENST00000395727 FOXD1Q16676 465 aa16.56■□□□□ 0.24
PTPN20-208ENST00000395727 PPP6R1Q9UPN7 881 aa15.98■□□□□ 0.15
PTPN20-208ENST00000395727 ADRA2BP18089 450 aa15.95■□□□□ 0.14
PTPN20-208ENST00000395727 PIAS4Q8N2W9 510 aaPredicted RBP15.6■□□□□ 0.09
PTPN20-208ENST00000395727 NISCHQ9Y2I1 1504 aa15.3■□□□□ 0.04
PTPN20-208ENST00000395727 MSH5O43196 834 aa15.24■□□□□ 0.03
PTPN20-208ENST00000395727 PPP4R3CPQ6ZMV5 832 aa14.75□□□□□ -0.05
PTPN20-208ENST00000395727 SCAF1Q9H7N4 1312 aaKnown RBP14.57□□□□□ -0.08
PTPN20-208ENST00000395727 KCNA4P22459 653 aa14.47□□□□□ -0.09
PTPN20-208ENST00000395727 MAPK8IP2Q13387 824 aaPredicted RBP14.46□□□□□ -0.09
PTPN20-208ENST00000395727 NCBP3Q53F19 620 aaKnown RBP14.35□□□□□ -0.11
PTPN20-208ENST00000395727 CNKSR2Q8WXI2 1034 aa14.33□□□□□ -0.12
PTPN20-208ENST00000395727 DMRT2Q9Y5R5 561 aa14.27□□□□□ -0.13
PTPN20-208ENST00000395727 NPM3O75607 178 aaKnown RBP14.18□□□□□ -0.14
PTPN20-208ENST00000395727 RNF216Q9NWF9 866 aaPredicted RBP14.05□□□□□ -0.16
PTPN20-208ENST00000395727 HOXD11P31277 338 aaPredicted RBP14□□□□□ -0.17
PTPN20-208ENST00000395727 DNAJC5BQ9UF47 199 aa13.84□□□□□ -0.19
PTPN20-208ENST00000395727 POTEDQ86YR6 584 aa13.8□□□□□ -0.2
PTPN20-208ENST00000395727 CCDC180Q9P1Z9 1646 aa13.76□□□□□ -0.21
PTPN20-208ENST00000395727 SLC4A1APQ9BWU0 796 aaKnown RBP13.76□□□□□ -0.21
PTPN20-208ENST00000395727 DCAF8L1A6NGE4 600 aa13.55□□□□□ -0.24
PTPN20-208ENST00000395727 ABCC9O60706 1549 aa13.45□□□□□ -0.26
PTPN20-208ENST00000395727 SLC4A2P04920 1241 aa13.4□□□□□ -0.26
PTPN20-208ENST00000395727 EHMT2Q96KQ7 1210 aa13.4□□□□□ -0.26
PTPN20-208ENST00000395727 ZBTB22O15209 634 aa13.34□□□□□ -0.27
PTPN20-208ENST00000395727 CSRNP3Q8WYN3 585 aa13.29□□□□□ -0.28
PTPN20-208ENST00000395727 FOXD4L1Q9NU39 408 aa13.29□□□□□ -0.28
PTPN20-208ENST00000395727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.27□□□□□ -0.29
PTPN20-208ENST00000395727 U3KPZ7 1027 aaPredicted RBP13.12□□□□□ -0.31
PTPN20-208ENST00000395727 MYCNP04198 464 aaPredicted RBP13.09□□□□□ -0.31
PTPN20-208ENST00000395727 RNF39Q9H2S5 420 aa13.08□□□□□ -0.32
PTPN20-208ENST00000395727 RB1CC1Q8TDY2 1594 aa12.98□□□□□ -0.33
PTPN20-208ENST00000395727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.94□□□□□ -0.34
PTPN20-208ENST00000395727 HNRNPUL2Q1KMD3 747 aaKnown RBP12.94□□□□□ -0.34
PTPN20-208ENST00000395727 NACADO15069 1562 aa12.94□□□□□ -0.34
PTPN20-208ENST00000395727 C1QBPQ07021 282 aaKnown RBP12.92□□□□□ -0.34
PTPN20-208ENST00000395727 SAMD1Q6SPF0 538 aaPredicted RBP12.9□□□□□ -0.34
PTPN20-208ENST00000395727 MYO15BQ96JP2 1530 aa12.88□□□□□ -0.35
PTPN20-208ENST00000395727 ATXN8OSP0DMR3 200 aa12.84□□□□□ -0.35
PTPN20-208ENST00000395727 APLP2Q06481 763 aa12.77□□□□□ -0.37
PTPN20-208ENST00000395727 DCAF1Q9Y4B6 1507 aa12.74□□□□□ -0.37
PTPN20-208ENST00000395727 ZCCHC6Q5VYS8 1495 aaKnown RBP12.74□□□□□ -0.37
PTPN20-208ENST00000395727 ATF5Q9Y2D1 282 aaPredicted RBP12.74□□□□□ -0.37
PTPN20-208ENST00000395727 SPINK5Q9NQ38 1064 aaPredicted RBP12.72□□□□□ -0.37
PTPN20-208ENST00000395727 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.38
PTPN20-208ENST00000395727 CACNB1Q02641 598 aaPredicted RBP12.65□□□□□ -0.38
PTPN20-208ENST00000395727 CAPN15O75808 1086 aa12.63□□□□□ -0.39
PTPN20-208ENST00000395727 DCAF8L2P0C7V8 631 aa12.61□□□□□ -0.39
PTPN20-208ENST00000395727 ZNF219Q9P2Y4 722 aaPredicted RBP12.6□□□□□ -0.39
PTPN20-208ENST00000395727 TRHP20396 242 aaPredicted RBP12.58□□□□□ -0.4
PTPN20-208ENST00000395727 BICRAQ9NZM4 1560 aa12.58□□□□□ -0.4
PTPN20-208ENST00000395727 SHROOM4Q9ULL8 1493 aa12.55□□□□□ -0.4
PTPN20-208ENST00000395727 DSG3P32926 999 aa12.46□□□□□ -0.41
PTPN20-208ENST00000395727 PABPN1Q86U42 306 aaKnown RBP eCLIP12.46□□□□□ -0.41
PTPN20-208ENST00000395727 POLA2Q14181 598 aa12.42□□□□□ -0.42
PTPN20-208ENST00000395727 SCRIBQ14160 1630 aa12.4□□□□□ -0.42
PTPN20-208ENST00000395727 ABCB7O75027 752 aa12.39□□□□□ -0.43
PTPN20-208ENST00000395727 EIF4G1Q04637 1599 aaKnown RBP12.25□□□□□ -0.45
PTPN20-208ENST00000395727 MKRN4PQ13434 485 aaPredicted RBP12.22□□□□□ -0.45
PTPN20-208ENST00000395727 CC2D2AQ9P2K1 1620 aa12.22□□□□□ -0.45
PTPN20-208ENST00000395727 ZBTB12Q9Y330 459 aaPredicted RBP12.21□□□□□ -0.45
PTPN20-208ENST00000395727 FBLN2P98095 1184 aa12.16□□□□□ -0.46
PTPN20-208ENST00000395727 CECR2Q9BXF3 1484 aa12.14□□□□□ -0.47
PTPN20-208ENST00000395727 OSCARQ8IYS5 282 aa11.99□□□□□ -0.49
PTPN20-208ENST00000395727 FKBP8Q14318 412 aa11.96□□□□□ -0.49
PTPN20-208ENST00000395727 NCAPD3P42695 1498 aa11.93□□□□□ -0.5
PTPN20-208ENST00000395727 SPDYE4A6NLX3 237 aa11.92□□□□□ -0.5
PTPN20-208ENST00000395727 SMARCA4P51532 1647 aa11.92□□□□□ -0.5
PTPN20-208ENST00000395727 SPDYE2BA6NHP3 402 aa11.9□□□□□ -0.5
PTPN20-208ENST00000395727 SPDYE6P0CI01 402 aa11.9□□□□□ -0.5
PTPN20-208ENST00000395727 SPDYE2Q495Y8 402 aa11.9□□□□□ -0.5
PTPN20-208ENST00000395727 BAZ1AQ9NRL2 1556 aaPredicted RBP11.89□□□□□ -0.51
PTPN20-208ENST00000395727 HMGXB3Q12766 1538 aa11.89□□□□□ -0.51
PTPN20-208ENST00000395727 SMARCA2P51531 1590 aa11.88□□□□□ -0.51
PTPN20-208ENST00000395727 ATAD2BQ9ULI0 1458 aa11.88□□□□□ -0.51
PTPN20-208ENST00000395727 PEG3Q9GZU2 1588 aa11.88□□□□□ -0.51
PTPN20-208ENST00000395727 RBM42Q9BTD8 480 aaKnown RBP11.85□□□□□ -0.51
PTPN20-208ENST00000395727 SSUH2Q9Y2M2 353 aa11.84□□□□□ -0.51
PTPN20-208ENST00000395727 ZNF692Q9BU19 519 aaPredicted RBP11.83□□□□□ -0.52
PTPN20-208ENST00000395727 PROM2Q8N271 834 aa11.8□□□□□ -0.52
PTPN20-208ENST00000395727 BAZ1BQ9UIG0 1483 aaKnown RBP11.75□□□□□ -0.53
PTPN20-208ENST00000395727 MROH2BQ7Z745 1585 aa11.75□□□□□ -0.53
PTPN20-208ENST00000395727 AKT1S1Q96B36 256 aa11.72□□□□□ -0.53
PTPN20-208ENST00000395727 CUX2O14529 1486 aa11.65□□□□□ -0.54
PTPN20-208ENST00000395727 LAMC3Q9Y6N6 1575 aa11.65□□□□□ -0.54
PTPN20-208ENST00000395727 ERCC6Q03468 1493 aa11.62□□□□□ -0.55
PTPN20-208ENST00000395727 REM2Q8IYK8 340 aaPredicted RBP11.61□□□□□ -0.55
PTPN20-208ENST00000395727 WIZO95785 1651 aa11.6□□□□□ -0.55
PTPN20-208ENST00000395727 NESP48681 1621 aa11.6□□□□□ -0.55
PTPN20-208ENST00000395727 THOC2Q8NI27 1593 aaKnown RBP11.56□□□□□ -0.56
PTPN20-208ENST00000395727 RSF1Q96T23 1441 aaPredicted RBP11.56□□□□□ -0.56
PTPN20-208ENST00000395727 SPDYE1Q8NFV5 336 aaPredicted RBP11.53□□□□□ -0.56
PTPN20-208ENST00000395727 FBXO3Q9UK99 471 aa11.53□□□□□ -0.56
PTPN20-208ENST00000395727 TOP2AP11388 1531 aaKnown RBP11.53□□□□□ -0.56
PTPN20-208ENST00000395727 PDS5BQ9NTI5 1447 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms