RNA–Protein interactions for RNA: ENST00000397611.7

PTPRD-205, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,242 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-205ENST00000397611 NISCHQ9Y2I1 1504 aa10.94□□□□□ -0.66
PTPRD-205ENST00000397611 ZCCHC6Q5VYS8 1495 aaKnown RBP9.29□□□□□ -0.92
PTPRD-205ENST00000397611 CCDC180Q9P1Z9 1646 aa9.28□□□□□ -0.92
PTPRD-205ENST00000397611 DCAF1Q9Y4B6 1507 aa9.23□□□□□ -0.93
PTPRD-205ENST00000397611 MYO15BQ96JP2 1530 aa9.03□□□□□ -0.96
PTPRD-205ENST00000397611 SUPT5HO00267 1087 aaKnown RBP8.94□□□□□ -0.98
PTPRD-205ENST00000397611 CHIC1Q5VXU3 224 aa8.94□□□□□ -0.98
PTPRD-205ENST00000397611 SHROOM4Q9ULL8 1493 aa8.92□□□□□ -0.98
PTPRD-205ENST00000397611 HRCP23327 699 aa8.79□□□□□ -1
PTPRD-205ENST00000397611 ABCC9O60706 1549 aa8.7□□□□□ -1.02
PTPRD-205ENST00000397611 DCAF8L2P0C7V8 631 aa8.69□□□□□ -1.02
PTPRD-205ENST00000397611 PELP1Q8IZL8 1130 aaKnown RBP8.69□□□□□ -1.02
PTPRD-205ENST00000397611 RSF1Q96T23 1441 aaPredicted RBP8.66□□□□□ -1.02
PTPRD-205ENST00000397611 ZEB1P37275 1124 aaPredicted RBP8.65□□□□□ -1.02
PTPRD-205ENST00000397611 NACADO15069 1562 aa8.64□□□□□ -1.03
PTPRD-205ENST00000397611 TRIM26Q12899 539 aaPredicted RBP8.6□□□□□ -1.03
PTPRD-205ENST00000397611 PCGF6Q9BYE7 350 aa8.59□□□□□ -1.03
PTPRD-205ENST00000397611 RB1CC1Q8TDY2 1594 aa8.56□□□□□ -1.04
PTPRD-205ENST00000397611 MYT1Q01538 1121 aa8.54□□□□□ -1.04
PTPRD-205ENST00000397611 TRIM41Q8WV44 630 aa8.51□□□□□ -1.05
PTPRD-205ENST00000397611 EEA1Q15075 1411 aa8.48□□□□□ -1.05
PTPRD-205ENST00000397611 BAZ1AQ9NRL2 1556 aaPredicted RBP8.46□□□□□ -1.06
PTPRD-205ENST00000397611 EHMT2Q96KQ7 1210 aa8.44□□□□□ -1.06
PTPRD-205ENST00000397611 WRNQ14191 1432 aaPredicted RBP eCLIP8.39□□□□□ -1.07
PTPRD-205ENST00000397611 LOC105371045A0A1W2PR82 267 aa8.39□□□□□ -1.07
PTPRD-205ENST00000397611 CENPBP07199 599 aaPredicted RBP8.39□□□□□ -1.07
PTPRD-205ENST00000397611 SCRIBQ14160 1630 aa8.38□□□□□ -1.07
PTPRD-205ENST00000397611 CECR2Q9BXF3 1484 aa8.36□□□□□ -1.07
PTPRD-205ENST00000397611 MROH2BQ7Z745 1585 aa8.36□□□□□ -1.07
PTPRD-205ENST00000397611 PPARGC1BQ86YN6 1023 aaKnown RBP8.33□□□□□ -1.08
PTPRD-205ENST00000397611 TNIKQ9UKE5 1360 aa8.31□□□□□ -1.08
PTPRD-205ENST00000397611 TOP2AP11388 1531 aaKnown RBP8.3□□□□□ -1.08
PTPRD-205ENST00000397611 YTHDC1Q96MU7 727 aaKnown RBP8.28□□□□□ -1.08
PTPRD-205ENST00000397611 EIF4G1Q04637 1599 aaKnown RBP8.26□□□□□ -1.09
PTPRD-205ENST00000397611 PEG3Q9GZU2 1588 aa8.25□□□□□ -1.09
PTPRD-205ENST00000397611 CSRNP3Q8WYN3 585 aa8.25□□□□□ -1.09
PTPRD-205ENST00000397611 ERICH6Q7L0X2 663 aa8.24□□□□□ -1.09
PTPRD-205ENST00000397611 TTBK1Q5TCY1 1321 aaPredicted RBP8.23□□□□□ -1.09
PTPRD-205ENST00000397611 CLSPNQ9HAW4 1339 aa8.2□□□□□ -1.1
PTPRD-205ENST00000397611 SMARCA4P51532 1647 aa8.2□□□□□ -1.1
PTPRD-205ENST00000397611 FAM9AQ8IZU1 332 aaPredicted RBP8.2□□□□□ -1.1
PTPRD-205ENST00000397611 CCER1Q8TC90 406 aaPredicted RBP8.19□□□□□ -1.1
PTPRD-205ENST00000397611 GOLGA3Q08378 1498 aa8.18□□□□□ -1.1
PTPRD-205ENST00000397611 CCDC88BA6NC98 1476 aa8.18□□□□□ -1.1
PTPRD-205ENST00000397611 CEP164Q9UPV0 1460 aa8.18□□□□□ -1.1
PTPRD-205ENST00000397611 CEP162Q5TB80 1403 aa8.18□□□□□ -1.1
PTPRD-205ENST00000397611 SMARCA2P51531 1590 aa8.17□□□□□ -1.1
PTPRD-205ENST00000397611 BAZ1BQ9UIG0 1483 aaKnown RBP8.16□□□□□ -1.1
PTPRD-205ENST00000397611 WIZO95785 1651 aa8.13□□□□□ -1.11
PTPRD-205ENST00000397611 VPS8Q8N3P4 1428 aa8.11□□□□□ -1.11
PTPRD-205ENST00000397611 ATAD2BQ9ULI0 1458 aa8.09□□□□□ -1.11
PTPRD-205ENST00000397611 CLIP1P30622 1438 aa8.07□□□□□ -1.12
PTPRD-205ENST00000397611 KIF21BO75037 1637 aa8.07□□□□□ -1.12
PTPRD-205ENST00000397611 SOGA1O94964 1423 aa8.06□□□□□ -1.12
PTPRD-205ENST00000397611 NCAPD3P42695 1498 aa8.05□□□□□ -1.12
PTPRD-205ENST00000397611 APLP2Q06481 763 aa8.05□□□□□ -1.12
PTPRD-205ENST00000397611 UBTFP17480 764 aaKnown RBP8.04□□□□□ -1.12
PTPRD-205ENST00000397611 GTF3C3Q9Y5Q9 886 aa8.04□□□□□ -1.12
PTPRD-205ENST00000397611 ERICH3Q5RHP9 1530 aa8.04□□□□□ -1.12
PTPRD-205ENST00000397611 BICRAQ9NZM4 1560 aa8.03□□□□□ -1.12
PTPRD-205ENST00000397611 ACIN1Q9UKV3 1341 aaKnown RBP8.03□□□□□ -1.12
PTPRD-205ENST00000397611 PRXQ9BXM0 1461 aa8.02□□□□□ -1.13
PTPRD-205ENST00000397611 HMGXB3Q12766 1538 aa8.02□□□□□ -1.13
PTPRD-205ENST00000397611 ZNF316A6NFI3 1004 aaPredicted RBP8.01□□□□□ -1.13
PTPRD-205ENST00000397611 NEFLP07196 543 aa8□□□□□ -1.13
PTPRD-205ENST00000397611 DIEXFQ68CQ4 756 aaKnown RBP8□□□□□ -1.13
PTPRD-205ENST00000397611 ABCC8Q09428 1581 aa7.98□□□□□ -1.13
PTPRD-205ENST00000397611 TIMELESSQ9UNS1 1208 aa7.98□□□□□ -1.13
PTPRD-205ENST00000397611 KIF27Q86VH2 1401 aa7.97□□□□□ -1.13
PTPRD-205ENST00000397611 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.97□□□□□ -1.13
PTPRD-205ENST00000397611 MAP3K1Q13233 1512 aa7.96□□□□□ -1.13
PTPRD-205ENST00000397611 CUX2O14529 1486 aa7.95□□□□□ -1.14
PTPRD-205ENST00000397611 TOP2BQ02880 1626 aa7.94□□□□□ -1.14
PTPRD-205ENST00000397611 CFTRP13569 1480 aa7.94□□□□□ -1.14
PTPRD-205ENST00000397611 SCAF1Q9H7N4 1312 aaKnown RBP7.93□□□□□ -1.14
PTPRD-205ENST00000397611 RRBP1Q9P2E9 1410 aaKnown RBP7.91□□□□□ -1.14
PTPRD-205ENST00000397611 SYNJ1O43426 1573 aa7.91□□□□□ -1.14
PTPRD-205ENST00000397611 RUSC2Q8N2Y8 1516 aa7.91□□□□□ -1.14
PTPRD-205ENST00000397611 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.9□□□□□ -1.15
PTPRD-205ENST00000397611 RAPGEF2Q9Y4G8 1499 aa7.89□□□□□ -1.15
PTPRD-205ENST00000397611 RANGAP1P46060 587 aaPredicted RBP7.88□□□□□ -1.15
PTPRD-205ENST00000397611 FHAD1B1AJZ9 1412 aa7.88□□□□□ -1.15
PTPRD-205ENST00000397611 BIVM-ERCC5R4GMW8 1640 aa7.87□□□□□ -1.15
PTPRD-205ENST00000397611 NEUROD1Q13562 356 aa7.87□□□□□ -1.15
PTPRD-205ENST00000397611 PABPN1Q86U42 306 aaKnown RBP eCLIP7.85□□□□□ -1.15
PTPRD-205ENST00000397611 BCANQ96GW7 911 aa7.85□□□□□ -1.15
PTPRD-205ENST00000397611 CCNB3Q8WWL7 1395 aa7.85□□□□□ -1.15
PTPRD-205ENST00000397611 CADPSQ9ULU8 1353 aa7.85□□□□□ -1.15
PTPRD-205ENST00000397611 DHX57Q6P158 1386 aaKnown RBP7.84□□□□□ -1.15
PTPRD-205ENST00000397611 IGF1RP08069 1367 aa7.81□□□□□ -1.16
PTPRD-205ENST00000397611 ARAP1Q96P48 1450 aa7.81□□□□□ -1.16
PTPRD-205ENST00000397611 UNC13AQ9UPW8 1703 aa7.8□□□□□ -1.16
PTPRD-205ENST00000397611 AQRO60306 1485 aaKnown RBP eCLIP7.8□□□□□ -1.16
PTPRD-205ENST00000397611 HNRNPUL2Q1KMD3 747 aaKnown RBP7.79□□□□□ -1.16
PTPRD-205ENST00000397611 CARMIL1Q5VZK9 1371 aa7.78□□□□□ -1.16
PTPRD-205ENST00000397611 ARHGAP35Q9NRY4 1499 aa7.78□□□□□ -1.16
PTPRD-205ENST00000397611 CUX1P39880 1505 aa7.77□□□□□ -1.17
PTPRD-205ENST00000397611 EFCAB5A4FU69 1503 aa7.76□□□□□ -1.17
PTPRD-205ENST00000397611 RTL5Q5HYW3 569 aaPredicted RBP7.76□□□□□ -1.17
PTPRD-205ENST00000397611 FMN1Q68DA7 1419 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms