Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 AL137013.1-201ENST00000432946 1228 ntBASIC23.24■■□□□ 1.31
DDX4Q9NQI0 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 AL049597.2-201ENST00000565575 961 ntBASIC23.24■■□□□ 1.31
DDX4Q9NQI0 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 AL691432.2-201ENST00000607222 2038 ntBASIC23.24■■□□□ 1.31
DDX4Q9NQI0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
DDX4Q9NQI0 KRT8P8-201ENST00000434750 1448 ntBASIC23.24■■□□□ 1.31
DDX4Q9NQI0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 AC104076.2-201ENST00000448912 469 ntBASIC23.23■■□□□ 1.31
DDX4Q9NQI0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
DDX4Q9NQI0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
DDX4Q9NQI0 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
DDX4Q9NQI0 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
DDX4Q9NQI0 AC004951.3-201ENST00000418645 1148 ntBASIC23.22■■□□□ 1.31
DDX4Q9NQI0 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
DDX4Q9NQI0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC23.22■■□□□ 1.31
DDX4Q9NQI0 EGLN1P1-201ENST00000531623 762 ntBASIC23.22■■□□□ 1.31
DDX4Q9NQI0 C2orf69P3-201ENST00000565542 1120 ntBASIC23.22■■□□□ 1.31
DDX4Q9NQI0 SLC25A1P4-201ENST00000567977 778 ntBASIC23.22■■□□□ 1.31
DDX4Q9NQI0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC23.22■■□□□ 1.31
DDX4Q9NQI0 AP001271.2-201ENST00000624018 1556 ntBASIC23.22■■□□□ 1.31
DDX4Q9NQI0 AL162377.1-201ENST00000618844 1793 ntBASIC23.22■■□□□ 1.31
DDX4Q9NQI0 LINC01465-201ENST00000408887 1940 ntBASIC23.21■■□□□ 1.31
DDX4Q9NQI0 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 AC091390.4-202ENST00000476426 537 ntBASIC23.21■■□□□ 1.31
DDX4Q9NQI0 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 FAM87A-204ENST00000613235 858 ntBASIC23.21■■□□□ 1.31
DDX4Q9NQI0 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
DDX4Q9NQI0 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC23.2■■□□□ 1.3
DDX4Q9NQI0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 CLN6-221ENST00000637494 765 ntTSL 5 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC23.19■■□□□ 1.3
DDX4Q9NQI0 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
DDX4Q9NQI0 AC006011.2-201ENST00000621313 1158 ntBASIC23.18■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms