Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC004264.1-201ENST00000608354 794 ntBASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM39Q9HCM9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
TRIM39Q9HCM9 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 AC009237.14-201ENST00000609975 1594 ntBASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 TCF3P1-201ENST00000423021 1937 ntBASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM39Q9HCM9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 YBX1P10-201ENST00000444752 975 ntBASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM39Q9HCM9 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms