Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 AC093503.3-201ENST00000624917 2352 ntBASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
HERPUD2Q9BSE4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 LINC01465-201ENST00000408887 1940 ntBASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 AC005829.2-201ENST00000571422 1056 ntBASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
HERPUD2Q9BSE4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HERPUD2Q9BSE4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 AC098934.4-201ENST00000564127 592 ntBASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HERPUD2Q9BSE4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 AC091874.3-201ENST00000512672 1195 ntBASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 AC006557.6-201ENST00000623071 864 ntBASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HERPUD2Q9BSE4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HERPUD2Q9BSE4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms