Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.08■□□□□ 0.32
NKX3-1Q99801 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
NKX3-1Q99801 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 KRT8P17-201ENST00000453110 1448 ntBASIC17.07■□□□□ 0.32
NKX3-1Q99801 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.07■□□□□ 0.32
NKX3-1Q99801 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
NKX3-1Q99801 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 AC009237.14-201ENST00000609975 1594 ntBASIC17.06■□□□□ 0.32
NKX3-1Q99801 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 AL355472.2-201ENST00000422958 438 ntBASIC17.06■□□□□ 0.32
NKX3-1Q99801 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 MFSD11-216ENST00000590393 1141 ntBASIC17.06■□□□□ 0.32
NKX3-1Q99801 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.06■□□□□ 0.32
NKX3-1Q99801 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
NKX3-1Q99801 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 HCG11-201ENST00000411553 5696 ntBASIC17.05■□□□□ 0.32
NKX3-1Q99801 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
NKX3-1Q99801 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.05■□□□□ 0.32
NKX3-1Q99801 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms