Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SMARCA2-252ENST00000636559 6853 ntTSL 2 BASIC7.8□□□□□ -1.163e-6■■■■□ 22.1
UPF1Q92900 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.24■□□□□ 0.672e-7■■■■□ 22.1
UPF1Q92900 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.25e-11■■■■□ 22.1
UPF1Q92900 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC25.6■■□□□ 1.695e-11■■■■□ 22.1
UPF1Q92900 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.225e-10■■■■□ 22.1
UPF1Q92900 P3H3-211ENST00000612048 2129 ntTSL 1 (best)18.68■□□□□ 0.585e-10■■■■□ 22.1
UPF1Q92900 P3H3-202ENST00000536140 3226 ntTSL 213.52□□□□□ -0.255e-10■■■■□ 22.1
UPF1Q92900 AES-206ENST00000586742 1666 ntTSL 325.29■■□□□ 1.642e-7■■■■□ 22.1
UPF1Q92900 ADGRG1-239ENST00000565539 2688 ntTSL 210.59□□□□□ -0.714e-6■■■■□ 22.1
UPF1Q92900 KIF2A-207ENST00000509663 759 ntTSL 327.75■■■□□ 2.031e-6■■■■□ 22.1
UPF1Q92900 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.56e-7■■■■□ 22
UPF1Q92900 PPIL2-207ENST00000462188 1735 ntTSL 220.78■□□□□ 0.925e-11■■■■□ 22
UPF1Q92900 PPIL2-205ENST00000446951 1926 ntTSL 1 (best)18.33■□□□□ 0.525e-11■■■■□ 22
UPF1Q92900 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.42□□□□□ -0.15e-11■■■■□ 22
UPF1Q92900 PPIL2-201ENST00000335025 4929 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.55e-11■■■■□ 22
UPF1Q92900 PPIL2-203ENST00000406385 3875 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.585e-11■■■■□ 22
UPF1Q92900 PPIL2-204ENST00000417788 4213 ntTSL 211.07□□□□□ -0.645e-11■■■■□ 22
UPF1Q92900 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.55□□□□□ -0.243e-6■■■■□ 22
UPF1Q92900 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.323e-6■■■■□ 22
UPF1Q92900 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC7.5□□□□□ -1.213e-6■■■■□ 22
UPF1Q92900 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC7.84□□□□□ -1.155e-7■■■■□ 22
UPF1Q92900 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC23.49■■□□□ 1.351e-6■■■■□ 22
UPF1Q92900 RAB27A-201ENST00000336787 3446 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.464e-9■■■■□ 22
UPF1Q92900 RAB27A-202ENST00000396307 3459 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.784e-9■■■■□ 22
UPF1Q92900 STK40-208ENST00000482458 900 ntTSL 338.41■■■■□ 3.746e-8■■■■□ 22
UPF1Q92900 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.092e-8■■■■□ 22
UPF1Q92900 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.028e-7■■■■□ 22
UPF1Q92900 PTGFRN-203ENST00000497385 457 ntTSL 39.5□□□□□ -0.898e-7■■■■□ 22
UPF1Q92900 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.211e-7■■■■□ 22
UPF1Q92900 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC36.45■■■■□ 3.438e-10■■■■□ 22
UPF1Q92900 IL4I1-206ENST00000596022 747 ntTSL 223.04■■□□□ 1.283e-7■■■■□ 22
UPF1Q92900 IL4I1-208ENST00000601717 2261 ntTSL 1 (best)19.63■□□□□ 0.733e-7■■■■□ 22
UPF1Q92900 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.693e-7■■■■□ 22
UPF1Q92900 IL4I1-207ENST00000597295 651 ntTSL 319.34■□□□□ 0.693e-7■■■■□ 22
UPF1Q92900 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.463e-7■■■■□ 22
UPF1Q92900 IL4I1-205ENST00000596011 714 ntTSL 213.93□□□□□ -0.183e-7■■■■□ 22
UPF1Q92900 NUP62-202ENST00000422090 3479 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.863e-7■■■■□ 22
UPF1Q92900 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.95■□□□□ 0.33e-6■■■■□ 22
UPF1Q92900 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.01■■□□□ 1.271e-6■■■■□ 22
UPF1Q92900 RAB11FIP4-202ENST00000578148 403 ntTSL 313.29□□□□□ -0.281e-6■■■■□ 22
UPF1Q92900 TNFRSF19-201ENST00000248484 3276 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.735e-8■■■■□ 22
UPF1Q92900 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.985e-8■■■■□ 22
UPF1Q92900 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC8.42□□□□□ -1.065e-8■■■■□ 22
UPF1Q92900 ZNF395-206ENST00000520535 625 ntTSL 516.51■□□□□ 0.236e-8■■■■□ 21.9
UPF1Q92900 FBXO16-210ENST00000521548 2983 ntTSL 213.79□□□□□ -0.26e-8■■■■□ 21.9
UPF1Q92900 PEG10-204ENST00000493935 763 ntTSL 416.96■□□□□ 0.317e-15■■■■□ 21.9
UPF1Q92900 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC9.36□□□□□ -0.917e-15■■■■□ 21.9
UPF1Q92900 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -17e-15■■■■□ 21.9
UPF1Q92900 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC8.8□□□□□ -17e-15■■■■□ 21.9
UPF1Q92900 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC8.67□□□□□ -1.027e-15■■■■□ 21.9
UPF1Q92900 EIF1AD-204ENST00000526451 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.366e-8■■■■□ 21.9
UPF1Q92900 EIF1AD-201ENST00000312234 2887 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.786e-8■■■■□ 21.9
UPF1Q92900 EHD2-201ENST00000263277 3585 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.67e-7■■■■□ 21.9
UPF1Q92900 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC8.39□□□□□ -1.071e-9■■■■□ 21.9
UPF1Q92900 SPOUT1-204ENST00000467582 898 ntTSL 218.83■□□□□ 0.65e-7■■■■□ 21.9
UPF1Q92900 MFSD12-210ENST00000589157 714 ntTSL 222.13■■□□□ 1.137e-7■■■■□ 21.9
UPF1Q92900 TIMELESS-203ENST00000553532 5121 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.631e-6■■■■□ 21.9
UPF1Q92900 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.456e-12■■■■□ 21.9
UPF1Q92900 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.022e-9■■■■□ 21.9
UPF1Q92900 HS1BP3-IT1-201ENST00000449391 600 ntTSL 2 BASIC16.28■□□□□ 0.21e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-223ENST00000640726 1636 ntTSL 527.75■■■□□ 2.039e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-214ENST00000639088 1451 ntTSL 526.43■■□□□ 1.829e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-205ENST00000638779 1983 ntTSL 525.07■■□□□ 1.69e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC22.58■■□□□ 1.219e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.719e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.599e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.589e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-204ENST00000639040 2568 ntTSL 518.69■□□□□ 0.589e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.88■□□□□ 0.459e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.42■□□□□ 0.389e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-201ENST00000638968 3175 ntTSL 515.93■□□□□ 0.149e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.15■□□□□ 0.029e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-208ENST00000640357 3488 ntTSL 514.92□□□□□ -0.029e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-206ENST00000639171 5352 ntTSL 511.22□□□□□ -0.619e-8■■■■□ 21.9
UPF1Q92900 AC118553.2-207ENST00000640238 2901 ntTSL 510.5□□□□□ -0.739e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-220ENST00000640360 4437 ntTSL 510.28□□□□□ -0.769e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-201ENST00000370153 5708 ntTSL 5 BASIC7.92□□□□□ -1.149e-8■■■■□ 21.9
UPF1Q92900 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.229e-8■■■■□ 21.9
UPF1Q92900 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC33.21■■■□□ 2.912e-9■■■■□ 21.9
UPF1Q92900 AKT1S1-209ENST00000599525 438 ntTSL 432.08■■■□□ 2.736e-6■■■■□ 21.9
UPF1Q92900 KLC1-211ENST00000538504 822 ntTSL 232.01■■■□□ 2.715e-8■■■■□ 21.9
UPF1Q92900 KLC1-226ENST00000557686 535 ntTSL 330.09■■■□□ 2.415e-8■■■■□ 21.9
UPF1Q92900 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.262e-9■■■■□ 21.9
UPF1Q92900 KLC1-209ENST00000535194 710 ntTSL 328.97■■■□□ 2.234e-9■■■■□ 21.9
UPF1Q92900 TAZ-220ENST00000615986 1900 ntTSL 228.8■■■□□ 2.22e-9■■■■□ 21.9
UPF1Q92900 AC005224.4-201ENST00000583262 1652 ntBASIC28.54■■■□□ 2.166e-6■■■■□ 21.9
UPF1Q92900 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.42■■■□□ 2.142e-9■■■■□ 21.9
UPF1Q92900 PP7080-202ENST00000502511 552 ntTSL 428.37■■■□□ 2.136e-6■■■■□ 21.9
UPF1Q92900 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.056e-6■■■■□ 21.9
UPF1Q92900 PP7080-204ENST00000510714 601 ntTSL 3 BASIC27.62■■■□□ 2.016e-6■■■■□ 21.9
UPF1Q92900 PSMD7-206ENST00000568717 1395 ntTSL 227.21■■□□□ 1.956e-6■■■■□ 21.9
UPF1Q92900 TM7SF2-214ENST00000529292 1305 ntTSL 526.9■■□□□ 1.96e-6■■■■□ 21.9
UPF1Q92900 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC26.69■■□□□ 1.866e-6■■■■□ 21.9
UPF1Q92900 TM7SF2-216ENST00000529601 1671 ntTSL 226.64■■□□□ 1.866e-6■■■■□ 21.9
UPF1Q92900 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC26.51■■□□□ 1.832e-9■■■■□ 21.9
UPF1Q92900 TM7SF2-217ENST00000530650 2094 ntTSL 1 (best)26.1■■□□□ 1.776e-6■■■■□ 21.9
UPF1Q92900 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.746e-6■■■■□ 21.9
UPF1Q92900 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC25.7■■□□□ 1.76e-6■■■■□ 21.9
UPF1Q92900 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.63■■□□□ 1.536e-6■■■■□ 21.9
UPF1Q92900 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.426e-6■■■■□ 21.9
Retrieved 100 of 15,879 protein–RNA pairs in 126.9 ms