Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 AC073111.5-205ENST00000641717 521 ntBASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
ATG4AQ8WYN0 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 AC018553.1-201ENST00000616682 1458 ntBASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
ATG4AQ8WYN0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.33■□□□□ 0.84
ATG4AQ8WYN0 AC093503.3-201ENST00000624917 2352 ntBASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 AC133552.2-202ENST00000575694 574 ntBASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 AC080038.1-201ENST00000611274 1154 ntBASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.32■□□□□ 0.84
ATG4AQ8WYN0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
ATG4AQ8WYN0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 CDCA4P2-201ENST00000441182 718 ntBASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 AC105036.2-201ENST00000569468 176 ntBASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 MKRN4P-201ENST00000444706 1521 ntBASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
ATG4AQ8WYN0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms