Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.95■□□□□ 0.94
CHD9Q3L8U1 AC006538.3-201ENST00000612495 578 ntBASIC20.95■□□□□ 0.94
CHD9Q3L8U1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHD9Q3L8U1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.94■□□□□ 0.94
CHD9Q3L8U1 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.94■□□□□ 0.94
CHD9Q3L8U1 UNC93B7-201ENST00000509439 705 ntBASIC20.94■□□□□ 0.94
CHD9Q3L8U1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHD9Q3L8U1 LINC01465-201ENST00000408887 1940 ntBASIC20.94■□□□□ 0.94
CHD9Q3L8U1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHD9Q3L8U1 ATP5G2P1-201ENST00000433580 426 ntBASIC20.94■□□□□ 0.94
CHD9Q3L8U1 AC009078.2-202ENST00000463353 338 ntBASIC20.94■□□□□ 0.94
CHD9Q3L8U1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.93■□□□□ 0.94
CHD9Q3L8U1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 HLA-A-209ENST00000638375 975 ntBASIC20.93■□□□□ 0.94
CHD9Q3L8U1 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CHD9Q3L8U1 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 KRT8P17-201ENST00000453110 1448 ntBASIC20.92■□□□□ 0.94
CHD9Q3L8U1 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
CHD9Q3L8U1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 AP003041.3-201ENST00000527151 707 ntBASIC20.91■□□□□ 0.94
CHD9Q3L8U1 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.91■□□□□ 0.94
CHD9Q3L8U1 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 AL353719.1-201ENST00000566847 864 ntBASIC20.9■□□□□ 0.94
CHD9Q3L8U1 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.9■□□□□ 0.94
CHD9Q3L8U1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CHD9Q3L8U1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CHD9Q3L8U1 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.89■□□□□ 0.94
CHD9Q3L8U1 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.89■□□□□ 0.94
CHD9Q3L8U1 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.89■□□□□ 0.94
CHD9Q3L8U1 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
CHD9Q3L8U1 AL031432.5-201ENST00000641059 760 ntBASIC20.89■□□□□ 0.94
CHD9Q3L8U1 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 NT5C-210ENST00000582160 860 ntTSL 2 BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CHD9Q3L8U1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.88■□□□□ 0.93
CHD9Q3L8U1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms