Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CX3CL1P78423 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC15.8■□□□□ 0.12
CX3CL1P78423 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC15.79■□□□□ 0.12
CX3CL1P78423 AC098818.2-201ENST00000564925 2320 ntBASIC15.79■□□□□ 0.12
CX3CL1P78423 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.79■□□□□ 0.12
CX3CL1P78423 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.79■□□□□ 0.12
CX3CL1P78423 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CX3CL1P78423 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.79■□□□□ 0.12
CX3CL1P78423 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC15.79■□□□□ 0.12
CX3CL1P78423 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 PNMA6B-201ENST00000538162 1200 ntBASIC15.79■□□□□ 0.12
CX3CL1P78423 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CX3CL1P78423 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CX3CL1P78423 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CX3CL1P78423 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.78■□□□□ 0.12
CX3CL1P78423 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC15.78■□□□□ 0.12
CX3CL1P78423 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 RER1-204ENST00000378518 522 ntTSL 3 BASIC15.78■□□□□ 0.12
CX3CL1P78423 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC15.78■□□□□ 0.12
CX3CL1P78423 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC15.78■□□□□ 0.12
CX3CL1P78423 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC15.78■□□□□ 0.12
CX3CL1P78423 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC15.78■□□□□ 0.12
CX3CL1P78423 AC006557.6-201ENST00000623071 864 ntBASIC15.78■□□□□ 0.12
CX3CL1P78423 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CX3CL1P78423 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
CX3CL1P78423 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CX3CL1P78423 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC15.78■□□□□ 0.12
CX3CL1P78423 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CX3CL1P78423 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.77■□□□□ 0.12
CX3CL1P78423 EML3-217ENST00000531557 2509 ntTSL 5 BASIC15.77■□□□□ 0.12
CX3CL1P78423 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CX3CL1P78423 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
CX3CL1P78423 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CX3CL1P78423 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
CX3CL1P78423 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 STK25-204ENST00000405585 1643 ntTSL 2 BASIC15.77■□□□□ 0.12
CX3CL1P78423 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.77■□□□□ 0.12
CX3CL1P78423 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC15.77■□□□□ 0.12
CX3CL1P78423 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC15.77■□□□□ 0.12
CX3CL1P78423 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC15.77■□□□□ 0.12
CX3CL1P78423 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CX3CL1P78423 INO80E-214ENST00000620599 515 ntTSL 2 BASIC15.77■□□□□ 0.12
CX3CL1P78423 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
CX3CL1P78423 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC15.77■□□□□ 0.11
CX3CL1P78423 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
CX3CL1P78423 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
CX3CL1P78423 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CX3CL1P78423 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms