Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.23■□□□□ 0.67
PKNOX1P55347 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
PKNOX1P55347 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 AL162430.1-201ENST00000480705 870 ntBASIC19.23■□□□□ 0.67
PKNOX1P55347 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.23■□□□□ 0.67
PKNOX1P55347 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.23■□□□□ 0.67
PKNOX1P55347 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
PKNOX1P55347 AC093503.3-201ENST00000624917 2352 ntBASIC19.23■□□□□ 0.67
PKNOX1P55347 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.23■□□□□ 0.67
PKNOX1P55347 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.23■□□□□ 0.67
PKNOX1P55347 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
PKNOX1P55347 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PKNOX1P55347 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.22■□□□□ 0.67
PKNOX1P55347 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.22■□□□□ 0.67
PKNOX1P55347 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.22■□□□□ 0.67
PKNOX1P55347 PHGDH-210ENST00000641115 1638 ntBASIC19.22■□□□□ 0.67
PKNOX1P55347 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.22■□□□□ 0.67
PKNOX1P55347 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.22■□□□□ 0.67
PKNOX1P55347 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.22■□□□□ 0.67
PKNOX1P55347 MIR5787-201ENST00000611784 55 ntBASIC19.22■□□□□ 0.67
PKNOX1P55347 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.22■□□□□ 0.67
PKNOX1P55347 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.22■□□□□ 0.67
PKNOX1P55347 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.22■□□□□ 0.67
PKNOX1P55347 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.22■□□□□ 0.67
PKNOX1P55347 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PKNOX1P55347 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.22■□□□□ 0.67
PKNOX1P55347 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.22■□□□□ 0.67
PKNOX1P55347 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.22■□□□□ 0.67
PKNOX1P55347 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PKNOX1P55347 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.21■□□□□ 0.67
PKNOX1P55347 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.21■□□□□ 0.67
PKNOX1P55347 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
PKNOX1P55347 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.21■□□□□ 0.67
PKNOX1P55347 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PKNOX1P55347 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
PKNOX1P55347 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.21■□□□□ 0.67
PKNOX1P55347 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.21■□□□□ 0.67
PKNOX1P55347 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.21■□□□□ 0.67
PKNOX1P55347 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PKNOX1P55347 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PKNOX1P55347 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
PKNOX1P55347 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PKNOX1P55347 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.2■□□□□ 0.66
PKNOX1P55347 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
PKNOX1P55347 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
PKNOX1P55347 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PKNOX1P55347 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.2■□□□□ 0.66
PKNOX1P55347 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
PKNOX1P55347 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.2■□□□□ 0.66
PKNOX1P55347 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PKNOX1P55347 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
PKNOX1P55347 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
PKNOX1P55347 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PKNOX1P55347 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms