Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MIR638-201ENST00000385237 100 ntBASIC17.26■□□□□ 0.35
SOX2P48431 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.26■□□□□ 0.35
SOX2P48431 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SOX2P48431 AL031963.3-201ENST00000606441 850 ntBASIC17.26■□□□□ 0.35
SOX2P48431 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.26■□□□□ 0.35
SOX2P48431 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
SOX2P48431 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SOX2P48431 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SOX2P48431 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
SOX2P48431 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 KRT8P20-201ENST00000423953 1409 ntBASIC17.25■□□□□ 0.35
SOX2P48431 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX2P48431 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.25■□□□□ 0.35
SOX2P48431 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.25■□□□□ 0.35
SOX2P48431 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SOX2P48431 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SOX2P48431 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX2P48431 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
SOX2P48431 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX2P48431 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SOX2P48431 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.25■□□□□ 0.35
SOX2P48431 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SOX2P48431 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
SOX2P48431 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC17.24■□□□□ 0.35
SOX2P48431 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
SOX2P48431 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SOX2P48431 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.24■□□□□ 0.35
SOX2P48431 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SOX2P48431 AP001271.2-201ENST00000624018 1556 ntBASIC17.23■□□□□ 0.35
SOX2P48431 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.23■□□□□ 0.35
SOX2P48431 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC17.23■□□□□ 0.35
SOX2P48431 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.23■□□□□ 0.35
SOX2P48431 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SOX2P48431 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
SOX2P48431 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.23■□□□□ 0.35
SOX2P48431 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.23■□□□□ 0.35
SOX2P48431 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SOX2P48431 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SOX2P48431 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
SOX2P48431 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX2P48431 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms