Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC26.08■■□□□ 1.77
COL18A1P39060 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC26.08■■□□□ 1.77
COL18A1P39060 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
COL18A1P39060 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
COL18A1P39060 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
COL18A1P39060 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
COL18A1P39060 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC26.08■■□□□ 1.76
COL18A1P39060 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC26.08■■□□□ 1.76
COL18A1P39060 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
COL18A1P39060 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC26.07■■□□□ 1.76
COL18A1P39060 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC26.07■■□□□ 1.76
COL18A1P39060 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
COL18A1P39060 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC26.07■■□□□ 1.76
COL18A1P39060 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC26.07■■□□□ 1.76
COL18A1P39060 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
COL18A1P39060 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
COL18A1P39060 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC26.07■■□□□ 1.76
COL18A1P39060 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
COL18A1P39060 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
COL18A1P39060 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC26.07■■□□□ 1.76
COL18A1P39060 AL671277.2-201ENST00000458060 996 ntBASIC26.07■■□□□ 1.76
COL18A1P39060 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC26.07■■□□□ 1.76
COL18A1P39060 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC26.07■■□□□ 1.76
COL18A1P39060 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
COL18A1P39060 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC26.07■■□□□ 1.76
COL18A1P39060 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
COL18A1P39060 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC26.07■■□□□ 1.76
COL18A1P39060 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC26.06■■□□□ 1.76
COL18A1P39060 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC26.06■■□□□ 1.76
COL18A1P39060 AC092647.4-201ENST00000457211 535 ntBASIC26.06■■□□□ 1.76
COL18A1P39060 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC26.06■■□□□ 1.76
COL18A1P39060 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC26.06■■□□□ 1.76
COL18A1P39060 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC26.06■■□□□ 1.76
COL18A1P39060 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
COL18A1P39060 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC26.06■■□□□ 1.76
COL18A1P39060 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC26.05■■□□□ 1.76
COL18A1P39060 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 AC012676.1-201ENST00000574705 1949 ntBASIC26.05■■□□□ 1.76
COL18A1P39060 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC26.05■■□□□ 1.76
COL18A1P39060 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.05■■□□□ 1.76
COL18A1P39060 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
COL18A1P39060 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC26.05■■□□□ 1.76
COL18A1P39060 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC26.05■■□□□ 1.76
COL18A1P39060 KRT126P-201ENST00000549467 1181 ntBASIC26.05■■□□□ 1.76
COL18A1P39060 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC26.05■■□□□ 1.76
COL18A1P39060 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC26.05■■□□□ 1.76
COL18A1P39060 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC26.05■■□□□ 1.76
COL18A1P39060 AC069148.1-201ENST00000608741 768 ntBASIC26.05■■□□□ 1.76
COL18A1P39060 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL18A1P39060 IER3-202ENST00000376377 1350 ntBASIC26.04■■□□□ 1.76
COL18A1P39060 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL18A1P39060 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
COL18A1P39060 ETFA-216ENST00000560726 942 ntTSL 3 BASIC26.04■■□□□ 1.76
COL18A1P39060 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC26.04■■□□□ 1.76
COL18A1P39060 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
COL18A1P39060 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
COL18A1P39060 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL18A1P39060 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
COL18A1P39060 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC26.03■■□□□ 1.76
COL18A1P39060 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL18A1P39060 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC26.03■■□□□ 1.76
COL18A1P39060 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL18A1P39060 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC26.03■■□□□ 1.76
COL18A1P39060 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC26.03■■□□□ 1.76
COL18A1P39060 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
COL18A1P39060 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC26.03■■□□□ 1.76
COL18A1P39060 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC26.03■■□□□ 1.76
COL18A1P39060 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
COL18A1P39060 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC26.03■■□□□ 1.76
COL18A1P39060 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC26.03■■□□□ 1.76
COL18A1P39060 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL18A1P39060 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC26.02■■□□□ 1.76
COL18A1P39060 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC26.02■■□□□ 1.76
COL18A1P39060 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC26.02■■□□□ 1.76
COL18A1P39060 AC093458.2-201ENST00000623150 629 ntBASIC26.02■■□□□ 1.76
COL18A1P39060 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC26.02■■□□□ 1.76
COL18A1P39060 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL18A1P39060 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC26.02■■□□□ 1.76
COL18A1P39060 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
COL18A1P39060 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC26.02■■□□□ 1.76
COL18A1P39060 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL18A1P39060 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC26.02■■□□□ 1.76
COL18A1P39060 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
COL18A1P39060 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL18A1P39060 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
COL18A1P39060 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC26.02■■□□□ 1.76
COL18A1P39060 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms