Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC16.63■□□□□ 0.25
USF1P22415 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.63■□□□□ 0.25
USF1P22415 RCN1P1-201ENST00000400413 996 ntBASIC16.63■□□□□ 0.25
USF1P22415 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
USF1P22415 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
USF1P22415 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.63■□□□□ 0.25
USF1P22415 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC16.63■□□□□ 0.25
USF1P22415 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.63■□□□□ 0.25
USF1P22415 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
USF1P22415 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC16.63■□□□□ 0.25
USF1P22415 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
USF1P22415 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
USF1P22415 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.62■□□□□ 0.25
USF1P22415 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
USF1P22415 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
USF1P22415 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.62■□□□□ 0.25
USF1P22415 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
USF1P22415 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
USF1P22415 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USF1P22415 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
USF1P22415 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.61■□□□□ 0.25
USF1P22415 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
USF1P22415 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USF1P22415 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USF1P22415 TMPOP1-202ENST00000424642 1267 ntBASIC16.61■□□□□ 0.25
USF1P22415 NUDT16P1-203ENST00000513809 620 ntBASIC16.61■□□□□ 0.25
USF1P22415 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.61■□□□□ 0.25
USF1P22415 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.61■□□□□ 0.25
USF1P22415 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.61■□□□□ 0.25
USF1P22415 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
USF1P22415 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
USF1P22415 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
USF1P22415 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USF1P22415 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.61■□□□□ 0.25
USF1P22415 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 KRT8P20-201ENST00000423953 1409 ntBASIC16.61■□□□□ 0.25
USF1P22415 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
USF1P22415 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
USF1P22415 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
USF1P22415 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
USF1P22415 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.6■□□□□ 0.25
USF1P22415 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.6■□□□□ 0.25
USF1P22415 UNC93B2-201ENST00000285383 730 ntBASIC16.6■□□□□ 0.25
USF1P22415 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.6■□□□□ 0.25
USF1P22415 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
USF1P22415 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 LINC01006-201ENST00000333319 2292 ntBASIC16.59■□□□□ 0.25
USF1P22415 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
USF1P22415 GABARAPL3-202ENST00000624044 1851 ntBASIC16.59■□□□□ 0.25
USF1P22415 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.59■□□□□ 0.25
USF1P22415 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
USF1P22415 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.59■□□□□ 0.25
USF1P22415 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 RBM17P1-201ENST00000453646 1190 ntBASIC16.59■□□□□ 0.25
USF1P22415 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.59■□□□□ 0.25
USF1P22415 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.59■□□□□ 0.25
USF1P22415 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC16.59■□□□□ 0.25
USF1P22415 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms