Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MMP3P08254 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.81■■□□□ 1.08
MMP3P08254 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
MMP3P08254 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MMP3P08254 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.8■■□□□ 1.08
MMP3P08254 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
MMP3P08254 AC020907.5-201ENST00000624372 1936 ntBASIC21.8■■□□□ 1.08
MMP3P08254 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
MMP3P08254 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
MMP3P08254 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MMP3P08254 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MMP3P08254 AP001271.2-201ENST00000624018 1556 ntBASIC21.8■■□□□ 1.08
MMP3P08254 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.8■■□□□ 1.08
MMP3P08254 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MMP3P08254 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.8■■□□□ 1.08
MMP3P08254 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MMP3P08254 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
MMP3P08254 MFAP1P1-201ENST00000442257 1255 ntBASIC21.8■■□□□ 1.08
MMP3P08254 ATP5G1P1-201ENST00000448724 379 ntBASIC21.8■■□□□ 1.08
MMP3P08254 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.8■■□□□ 1.08
MMP3P08254 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.8■■□□□ 1.08
MMP3P08254 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MMP3P08254 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
MMP3P08254 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
MMP3P08254 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
MMP3P08254 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.79■■□□□ 1.08
MMP3P08254 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.79■■□□□ 1.08
MMP3P08254 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
MMP3P08254 AC091390.4-202ENST00000476426 537 ntBASIC21.79■■□□□ 1.08
MMP3P08254 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.79■■□□□ 1.08
MMP3P08254 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
MMP3P08254 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
MMP3P08254 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MMP3P08254 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.78■■□□□ 1.08
MMP3P08254 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.78■■□□□ 1.08
MMP3P08254 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.78■■□□□ 1.08
MMP3P08254 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.78■■□□□ 1.08
MMP3P08254 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.78■■□□□ 1.08
MMP3P08254 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.78■■□□□ 1.08
MMP3P08254 CBFB-203ENST00000561924 584 ntTSL 5 BASIC21.78■■□□□ 1.08
MMP3P08254 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.78■■□□□ 1.08
MMP3P08254 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MMP3P08254 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MMP3P08254 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MMP3P08254 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.77■■□□□ 1.08
MMP3P08254 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.77■■□□□ 1.08
MMP3P08254 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MMP3P08254 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MMP3P08254 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MMP3P08254 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MMP3P08254 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.77■■□□□ 1.08
MMP3P08254 NTF6B-201ENST00000591913 560 ntBASIC21.77■■□□□ 1.08
MMP3P08254 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
MMP3P08254 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.77■■□□□ 1.08
MMP3P08254 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.77■■□□□ 1.08
MMP3P08254 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MMP3P08254 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
MMP3P08254 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
MMP3P08254 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
MMP3P08254 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
MMP3P08254 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
MMP3P08254 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.77■■□□□ 1.07
MMP3P08254 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MMP3P08254 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MMP3P08254 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MMP3P08254 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.76■■□□□ 1.07
MMP3P08254 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
MMP3P08254 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MMP3P08254 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.76■■□□□ 1.07
MMP3P08254 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.76■■□□□ 1.07
MMP3P08254 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MMP3P08254 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.76■■□□□ 1.07
MMP3P08254 AC007375.3-201ENST00000600936 2314 ntBASIC21.76■■□□□ 1.07
MMP3P08254 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MMP3P08254 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.76■■□□□ 1.07
MMP3P08254 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MMP3P08254 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.75■■□□□ 1.07
MMP3P08254 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
MMP3P08254 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
MMP3P08254 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
MMP3P08254 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MMP3P08254 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms