Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SNORA78-201ENST00000459373 127 ntBASIC24.84■■□□□ 1.57
CACNA1FO60840 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC24.84■■□□□ 1.57
CACNA1FO60840 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CACNA1FO60840 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
CACNA1FO60840 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC24.84■■□□□ 1.57
CACNA1FO60840 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
CACNA1FO60840 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CACNA1FO60840 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CACNA1FO60840 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CACNA1FO60840 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CACNA1FO60840 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC24.84■■□□□ 1.57
CACNA1FO60840 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC24.84■■□□□ 1.57
CACNA1FO60840 HLA-A-209ENST00000638375 975 ntBASIC24.84■■□□□ 1.57
CACNA1FO60840 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CACNA1FO60840 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
CACNA1FO60840 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC24.83■■□□□ 1.57
CACNA1FO60840 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC24.83■■□□□ 1.57
CACNA1FO60840 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
CACNA1FO60840 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC24.82■■□□□ 1.56
CACNA1FO60840 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
CACNA1FO60840 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC24.82■■□□□ 1.56
CACNA1FO60840 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC24.82■■□□□ 1.56
CACNA1FO60840 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CACNA1FO60840 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC24.82■■□□□ 1.56
CACNA1FO60840 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC24.82■■□□□ 1.56
CACNA1FO60840 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC24.82■■□□□ 1.56
CACNA1FO60840 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC24.82■■□□□ 1.56
CACNA1FO60840 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
CACNA1FO60840 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC24.81■■□□□ 1.56
CACNA1FO60840 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC24.81■■□□□ 1.56
CACNA1FO60840 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC24.81■■□□□ 1.56
CACNA1FO60840 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC24.81■■□□□ 1.56
CACNA1FO60840 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CACNA1FO60840 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CACNA1FO60840 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC24.81■■□□□ 1.56
CACNA1FO60840 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC24.81■■□□□ 1.56
CACNA1FO60840 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CACNA1FO60840 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC24.81■■□□□ 1.56
CACNA1FO60840 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24.8■■□□□ 1.56
CACNA1FO60840 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC24.8■■□□□ 1.56
CACNA1FO60840 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC24.8■■□□□ 1.56
CACNA1FO60840 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC24.8■■□□□ 1.56
CACNA1FO60840 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
CACNA1FO60840 DGCR10-201ENST00000609839 495 ntBASIC24.8■■□□□ 1.56
CACNA1FO60840 Z82202.1-201ENST00000623446 1880 ntBASIC24.8■■□□□ 1.56
CACNA1FO60840 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
CACNA1FO60840 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC24.8■■□□□ 1.56
CACNA1FO60840 Z85996.1-201ENST00000494644 937 ntBASIC24.8■■□□□ 1.56
CACNA1FO60840 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CACNA1FO60840 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 ZNF815P-204ENST00000434898 1737 ntBASIC24.79■■□□□ 1.56
CACNA1FO60840 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
CACNA1FO60840 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
CACNA1FO60840 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CACNA1FO60840 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1FO60840 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC24.78■■□□□ 1.56
CACNA1FO60840 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC24.78■■□□□ 1.56
CACNA1FO60840 FAM197Y1-201ENST00000421178 764 ntBASIC24.78■■□□□ 1.56
CACNA1FO60840 SAPCD2P4-201ENST00000424595 1171 ntBASIC24.78■■□□□ 1.56
CACNA1FO60840 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC24.78■■□□□ 1.56
CACNA1FO60840 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1FO60840 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1FO60840 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1FO60840 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1FO60840 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1FO60840 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CACNA1FO60840 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC24.78■■□□□ 1.56
CACNA1FO60840 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC24.78■■□□□ 1.56
CACNA1FO60840 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC24.78■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms