Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLDN3O15551 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.48■■□□□ 1.03
CLDN3O15551 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLDN3O15551 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.47■■□□□ 1.03
CLDN3O15551 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.47■■□□□ 1.03
CLDN3O15551 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.47■■□□□ 1.03
CLDN3O15551 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.47■■□□□ 1.03
CLDN3O15551 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.47■■□□□ 1.03
CLDN3O15551 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.47■■□□□ 1.03
CLDN3O15551 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
CLDN3O15551 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CLDN3O15551 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLDN3O15551 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLDN3O15551 AC008550.1-201ENST00000511500 884 ntBASIC21.47■■□□□ 1.03
CLDN3O15551 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLDN3O15551 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.47■■□□□ 1.03
CLDN3O15551 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CLDN3O15551 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CLDN3O15551 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLDN3O15551 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLDN3O15551 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLDN3O15551 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLDN3O15551 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC21.47■■□□□ 1.03
CLDN3O15551 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.47■■□□□ 1.03
CLDN3O15551 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
CLDN3O15551 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.46■■□□□ 1.03
CLDN3O15551 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.46■■□□□ 1.03
CLDN3O15551 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.46■■□□□ 1.03
CLDN3O15551 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.46■■□□□ 1.03
CLDN3O15551 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.46■■□□□ 1.03
CLDN3O15551 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.46■■□□□ 1.03
CLDN3O15551 AC093827.2-201ENST00000512654 315 ntBASIC21.46■■□□□ 1.03
CLDN3O15551 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.46■■□□□ 1.03
CLDN3O15551 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.46■■□□□ 1.03
CLDN3O15551 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.46■■□□□ 1.03
CLDN3O15551 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.46■■□□□ 1.03
CLDN3O15551 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
CLDN3O15551 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLDN3O15551 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.46■■□□□ 1.03
CLDN3O15551 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.45■■□□□ 1.02
CLDN3O15551 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CLDN3O15551 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.45■■□□□ 1.02
CLDN3O15551 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CLDN3O15551 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CLDN3O15551 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CLDN3O15551 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.45■■□□□ 1.02
CLDN3O15551 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.45■■□□□ 1.02
CLDN3O15551 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.45■■□□□ 1.02
CLDN3O15551 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.45■■□□□ 1.02
CLDN3O15551 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLDN3O15551 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CLDN3O15551 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.45■■□□□ 1.02
CLDN3O15551 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.45■■□□□ 1.02
CLDN3O15551 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CLDN3O15551 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CLDN3O15551 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.44■■□□□ 1.02
CLDN3O15551 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CLDN3O15551 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.44■■□□□ 1.02
CLDN3O15551 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.44■■□□□ 1.02
CLDN3O15551 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.44■■□□□ 1.02
CLDN3O15551 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 RARRES2P10-201ENST00000564312 460 ntBASIC21.44■■□□□ 1.02
CLDN3O15551 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.44■■□□□ 1.02
CLDN3O15551 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.44■■□□□ 1.02
CLDN3O15551 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.44■■□□□ 1.02
CLDN3O15551 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLDN3O15551 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms