Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
NPHP1O15259 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC24.72■■□□□ 1.55
NPHP1O15259 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC24.72■■□□□ 1.55
NPHP1O15259 AC018553.1-201ENST00000616682 1458 ntBASIC24.72■■□□□ 1.55
NPHP1O15259 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
NPHP1O15259 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.72■■□□□ 1.55
NPHP1O15259 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
NPHP1O15259 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC24.72■■□□□ 1.55
NPHP1O15259 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC24.72■■□□□ 1.55
NPHP1O15259 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC24.72■■□□□ 1.55
NPHP1O15259 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC24.72■■□□□ 1.55
NPHP1O15259 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
NPHP1O15259 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC24.72■■□□□ 1.55
NPHP1O15259 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NPHP1O15259 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
NPHP1O15259 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC24.72■■□□□ 1.55
NPHP1O15259 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
NPHP1O15259 TFP1-202ENST00000475455 1573 ntBASIC24.71■■□□□ 1.55
NPHP1O15259 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC24.71■■□□□ 1.55
NPHP1O15259 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC24.71■■□□□ 1.55
NPHP1O15259 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC24.71■■□□□ 1.55
NPHP1O15259 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 PRR31-201ENST00000371629 978 ntTSL 2 BASIC24.71■■□□□ 1.55
NPHP1O15259 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
NPHP1O15259 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC24.71■■□□□ 1.55
NPHP1O15259 FDX2-206ENST00000492239 773 ntTSL 2 BASIC24.71■■□□□ 1.55
NPHP1O15259 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC24.71■■□□□ 1.55
NPHP1O15259 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
NPHP1O15259 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
NPHP1O15259 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
NPHP1O15259 MED25-212ENST00000618715 1467 ntTSL 5 BASIC24.7■■□□□ 1.55
NPHP1O15259 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC24.7■■□□□ 1.55
NPHP1O15259 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.7■■□□□ 1.54
NPHP1O15259 BX664615.1-201ENST00000443558 458 ntBASIC24.7■■□□□ 1.54
NPHP1O15259 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC24.7■■□□□ 1.54
NPHP1O15259 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 KRT18P16-201ENST00000510337 1294 ntBASIC24.7■■□□□ 1.54
NPHP1O15259 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC24.7■■□□□ 1.54
NPHP1O15259 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC24.7■■□□□ 1.54
NPHP1O15259 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC24.7■■□□□ 1.54
NPHP1O15259 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC24.7■■□□□ 1.54
NPHP1O15259 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC24.7■■□□□ 1.54
NPHP1O15259 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC24.7■■□□□ 1.54
NPHP1O15259 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
NPHP1O15259 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.7■■□□□ 1.54
NPHP1O15259 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC24.7■■□□□ 1.54
NPHP1O15259 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC24.69■■□□□ 1.54
NPHP1O15259 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP1O15259 AC007375.3-201ENST00000600936 2314 ntBASIC24.69■■□□□ 1.54
NPHP1O15259 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP1O15259 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP1O15259 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP1O15259 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC24.69■■□□□ 1.54
NPHP1O15259 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
NPHP1O15259 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP1O15259 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP1O15259 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
NPHP1O15259 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP1O15259 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.68■■□□□ 1.54
NPHP1O15259 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP1O15259 FEM1AP4-201ENST00000443167 1987 ntBASIC24.68■■□□□ 1.54
NPHP1O15259 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC24.68■■□□□ 1.54
NPHP1O15259 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
NPHP1O15259 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC24.68■■□□□ 1.54
NPHP1O15259 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP1O15259 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC24.68■■□□□ 1.54
NPHP1O15259 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC24.68■■□□□ 1.54
NPHP1O15259 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC24.68■■□□□ 1.54
NPHP1O15259 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC24.68■■□□□ 1.54
NPHP1O15259 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP1O15259 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC24.68■■□□□ 1.54
NPHP1O15259 AC011298.2-201ENST00000617989 482 ntBASIC24.68■■□□□ 1.54
NPHP1O15259 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC24.68■■□□□ 1.54
NPHP1O15259 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC24.68■■□□□ 1.54
NPHP1O15259 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP1O15259 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC24.68■■□□□ 1.54
NPHP1O15259 GOLGA6L3-201ENST00000507199 1679 ntBASIC24.68■■□□□ 1.54
NPHP1O15259 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
NPHP1O15259 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
NPHP1O15259 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
NPHP1O15259 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC24.67■■□□□ 1.54
NPHP1O15259 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms