Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGN4O00479 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
HMGN4O00479 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.27■□□□□ 0.52
HMGN4O00479 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGN4O00479 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
HMGN4O00479 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGN4O00479 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HMGN4O00479 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.27■□□□□ 0.51
HMGN4O00479 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
HMGN4O00479 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
HMGN4O00479 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
HMGN4O00479 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGN4O00479 AC124283.5-201ENST00000624661 1809 ntBASIC18.26■□□□□ 0.51
HMGN4O00479 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.26■□□□□ 0.51
HMGN4O00479 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGN4O00479 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGN4O00479 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGN4O00479 AC006557.6-201ENST00000623071 864 ntBASIC18.26■□□□□ 0.51
HMGN4O00479 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGN4O00479 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGN4O00479 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGN4O00479 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGN4O00479 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGN4O00479 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGN4O00479 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGN4O00479 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGN4O00479 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 MIR4758-201ENST00000577688 71 ntBASIC18.25■□□□□ 0.51
HMGN4O00479 MYC-209ENST00000641252 345 ntBASIC18.25■□□□□ 0.51
HMGN4O00479 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HMGN4O00479 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGN4O00479 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HMGN4O00479 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGN4O00479 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGN4O00479 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGN4O00479 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.24■□□□□ 0.51
HMGN4O00479 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGN4O00479 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGN4O00479 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGN4O00479 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGN4O00479 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGN4O00479 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGN4O00479 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HMGN4O00479 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGN4O00479 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HMGN4O00479 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGN4O00479 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGN4O00479 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.23■□□□□ 0.51
HMGN4O00479 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HMGN4O00479 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGN4O00479 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGN4O00479 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGN4O00479 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGN4O00479 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms