Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TCRBV7S3A2A0A539 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TCRBV7S3A2A0A539 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TCRBV7S3A2A0A539 AC093503.3-201ENST00000624917 2352 ntBASIC19.97■□□□□ 0.79
TCRBV7S3A2A0A539 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.96■□□□□ 0.79
TCRBV7S3A2A0A539 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
TCRBV7S3A2A0A539 TFP1-202ENST00000475455 1573 ntBASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 MIPEPP3-201ENST00000412105 444 ntBASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 AC124283.5-201ENST00000624661 1809 ntBASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TCRBV7S3A2A0A539 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TCRBV7S3A2A0A539 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 DUSP5P2-201ENST00000426873 1033 ntBASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TCRBV7S3A2A0A539 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 LINC01465-201ENST00000408887 1940 ntBASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 AC083906.2-201ENST00000511578 360 ntBASIC19.92■□□□□ 0.78
TCRBV7S3A2A0A539 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms