Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC9□□□□□ -0.97
IFT140Q96RY7 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC9□□□□□ -0.97
IFT140Q96RY7 HSPD1P12-201ENST00000429127 1069 ntBASIC9□□□□□ -0.97
IFT140Q96RY7 AC104634.1-201ENST00000452720 462 ntBASIC9□□□□□ -0.97
IFT140Q96RY7 MEMO1P4-201ENST00000453590 386 ntBASIC9□□□□□ -0.97
IFT140Q96RY7 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC9□□□□□ -0.97
IFT140Q96RY7 BGLT3-201ENST00000564523 994 ntBASIC9□□□□□ -0.97
IFT140Q96RY7 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC9□□□□□ -0.97
IFT140Q96RY7 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC9□□□□□ -0.97
IFT140Q96RY7 RNF138P2-201ENST00000603490 592 ntBASIC9□□□□□ -0.97
IFT140Q96RY7 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
IFT140Q96RY7 PKHD1-201ENST00000340994 11589 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
IFT140Q96RY7 AL078621.3-201ENST00000623707 2042 ntBASIC9□□□□□ -0.97
IFT140Q96RY7 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC9□□□□□ -0.97
IFT140Q96RY7 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC9□□□□□ -0.97
IFT140Q96RY7 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
IFT140Q96RY7 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 U3.3-201ENST00000362986 216 ntBASIC8.99□□□□□ -0.97
IFT140Q96RY7 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 AL110118.1-201ENST00000553543 400 ntBASIC8.99□□□□□ -0.97
IFT140Q96RY7 H3F3BP2-201ENST00000583907 357 ntBASIC8.99□□□□□ -0.97
IFT140Q96RY7 AC019193.2-201ENST00000610012 634 ntBASIC8.99□□□□□ -0.97
IFT140Q96RY7 AC130448.2-201ENST00000624082 374 ntBASIC8.99□□□□□ -0.97
IFT140Q96RY7 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 MAPK10-371ENST00000641952 5209 ntBASIC8.99□□□□□ -0.97
IFT140Q96RY7 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
IFT140Q96RY7 LPP-208ENST00000448637 5835 ntTSL 5 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC8.99□□□□□ -0.97
IFT140Q96RY7 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
IFT140Q96RY7 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
IFT140Q96RY7 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
IFT140Q96RY7 GLULP6-201ENST00000399502 913 ntBASIC8.98□□□□□ -0.97
IFT140Q96RY7 RSL24D1P6-201ENST00000426934 401 ntBASIC8.98□□□□□ -0.97
IFT140Q96RY7 AP000797.2-201ENST00000475768 606 ntBASIC8.98□□□□□ -0.97
IFT140Q96RY7 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
IFT140Q96RY7 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
IFT140Q96RY7 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
IFT140Q96RY7 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
IFT140Q96RY7 SCN8A-203ENST00000545061 11433 ntTSL 5 BASIC8.98□□□□□ -0.97
IFT140Q96RY7 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 TNRC6A-201ENST00000315183 8303 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 RNA5SP479-201ENST00000364858 117 ntBASIC8.97□□□□□ -0.97
IFT140Q96RY7 RPL5P25-201ENST00000441148 775 ntBASIC8.97□□□□□ -0.97
IFT140Q96RY7 KNOP1P3-201ENST00000446933 426 ntBASIC8.97□□□□□ -0.97
IFT140Q96RY7 IGHVIII-47-1-201ENST00000518187 331 ntBASIC8.97□□□□□ -0.97
IFT140Q96RY7 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 AC011497.2-201ENST00000600255 639 ntBASIC8.97□□□□□ -0.97
IFT140Q96RY7 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 PBRM1-203ENST00000356770 7523 ntAPPRIS ALT1 TSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 C1orf21-201ENST00000235307 10265 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC8.97□□□□□ -0.97
IFT140Q96RY7 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC8.97□□□□□ -0.97
IFT140Q96RY7 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC8.97□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms