Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 SNORD1C-201ENST00000363315 78 ntBASIC9.07□□□□□ -0.96
CUX1P39880 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC9.07□□□□□ -0.96
CUX1P39880 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC9.07□□□□□ -0.96
CUX1P39880 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC9.07□□□□□ -0.96
CUX1P39880 IGHVII-44-2-201ENST00000517728 250 ntBASIC9.07□□□□□ -0.96
CUX1P39880 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC9.07□□□□□ -0.96
CUX1P39880 AC009237.13-201ENST00000603193 276 ntBASIC9.07□□□□□ -0.96
CUX1P39880 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC9.07□□□□□ -0.96
CUX1P39880 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC9.07□□□□□ -0.96
CUX1P39880 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC9.07□□□□□ -0.96
CUX1P39880 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC9.07□□□□□ -0.96
CUX1P39880 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 AC009948.3-201ENST00000603415 1798 ntBASIC9.07□□□□□ -0.96
CUX1P39880 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 SSPO-201ENST00000378016 15589 ntAPPRIS P1 TSL 5 BASIC9.07□□□□□ -0.96
CUX1P39880 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC9.07□□□□□ -0.96
CUX1P39880 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC9.07□□□□□ -0.96
CUX1P39880 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.96
CUX1P39880 MIPEPP2-201ENST00000422560 1819 ntBASIC9.07□□□□□ -0.96
CUX1P39880 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 SNORA70H-201ENST00000383910 135 ntBASIC9.06□□□□□ -0.96
CUX1P39880 SNORA70J-201ENST00000384182 135 ntBASIC9.06□□□□□ -0.96
CUX1P39880 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC9.06□□□□□ -0.96
CUX1P39880 AL121977.1-201ENST00000401636 979 ntBASIC9.06□□□□□ -0.96
CUX1P39880 MGAT2P2-201ENST00000427194 797 ntBASIC9.06□□□□□ -0.96
CUX1P39880 RPL34P20-201ENST00000442771 351 ntBASIC9.06□□□□□ -0.96
CUX1P39880 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC9.06□□□□□ -0.96
CUX1P39880 AC097484.1-201ENST00000471148 389 ntBASIC9.06□□□□□ -0.96
CUX1P39880 AC006463.2-201ENST00000473326 348 ntBASIC9.06□□□□□ -0.96
CUX1P39880 RPS4XP20-201ENST00000505751 772 ntBASIC9.06□□□□□ -0.96
CUX1P39880 H3F3BP2-201ENST00000583907 357 ntBASIC9.06□□□□□ -0.96
CUX1P39880 AL731566.2-201ENST00000618971 317 ntBASIC9.06□□□□□ -0.96
CUX1P39880 AC099494.2-201ENST00000623371 978 ntBASIC9.06□□□□□ -0.96
CUX1P39880 AC091905.4-201ENST00000623432 202 ntBASIC9.06□□□□□ -0.96
CUX1P39880 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC9.06□□□□□ -0.96
CUX1P39880 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC9.06□□□□□ -0.96
CUX1P39880 AC012618.3-205ENST00000637896 1496 ntBASIC9.06□□□□□ -0.96
CUX1P39880 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC9.06□□□□□ -0.96
CUX1P39880 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 MED28-201ENST00000237380 10868 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
CUX1P39880 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
CUX1P39880 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
CUX1P39880 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC9.06□□□□□ -0.96
CUX1P39880 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
CUX1P39880 GRIK2-206ENST00000413795 4876 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
CUX1P39880 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC9.06□□□□□ -0.96
CUX1P39880 CASC19-221ENST00000641309 1382 ntBASIC9.06□□□□□ -0.96
CUX1P39880 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC9.05□□□□□ -0.96
CUX1P39880 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC9.05□□□□□ -0.96
CUX1P39880 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX1P39880 AC023818.1-201ENST00000498379 384 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AC068790.4-201ENST00000602474 263 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX1P39880 AP000346.3-201ENST00000622821 210 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX1P39880 AC074101.1-201ENST00000637861 241 ntBASIC9.05□□□□□ -0.96
CUX1P39880 HSPA8P14-201ENST00000552265 1805 ntBASIC9.05□□□□□ -0.96
CUX1P39880 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
CUX1P39880 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC9.05□□□□□ -0.96
CUX1P39880 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC9.05□□□□□ -0.96
CUX1P39880 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC9.05□□□□□ -0.96
CUX1P39880 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 EEF1A1P33-201ENST00000554413 1362 ntBASIC9.05□□□□□ -0.96
CUX1P39880 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 MIR192-201ENST00000384915 110 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX1P39880 RNF10P1-201ENST00000418589 369 ntBASIC9.05□□□□□ -0.96
CUX1P39880 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
CUX1P39880 EIF2S2P3-201ENST00000428356 999 ntBASIC9.05□□□□□ -0.96
CUX1P39880 USP9YP9-201ENST00000429406 715 ntBASIC9.05□□□□□ -0.96
CUX1P39880 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX1P39880 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC9.05□□□□□ -0.96
CUX1P39880 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC9.05□□□□□ -0.96
CUX1P39880 GSTA7P-201ENST00000438425 448 ntBASIC9.05□□□□□ -0.96
CUX1P39880 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC9.05□□□□□ -0.96
CUX1P39880 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC9.05□□□□□ -0.96
CUX1P39880 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
CUX1P39880 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms