Protein–RNA interactions for Protein: Q9BYR6

KRTAP3-3, Keratin-associated protein 3-3, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRTAP3-3Q9BYR6 TTC12-210ENST00000483239 2240 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 UTP23-201ENST00000309822 3699 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 CBWD1-204ENST00000377447 2513 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 C14orf159-204ENST00000428926 2538 ntAPPRIS P3 TSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RN7SKP104-201ENST00000362605 328 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RNU6-652P-201ENST00000365488 107 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 KCNK16-202ENST00000373229 1248 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RNU6-793P-201ENST00000384233 104 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 SNORD116-22-201ENST00000384430 92 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 GEMIN8-203ENST00000398355 1119 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AL117342.1-201ENST00000404861 406 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RNU6-402P-201ENST00000410678 103 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC013248.2-201ENST00000412454 459 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 NTM-IT-201ENST00000421651 373 ntTSL 3 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 FRG2B-201ENST00000425520 890 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 C3orf84-201ENST00000432035 669 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC090774.1-201ENST00000435925 246 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AL590440.1-201ENST00000436960 428 ntTSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 C2orf27AP2-201ENST00000438438 555 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 GPATCH4-203ENST00000438976 1159 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 SYNPR-205ENST00000465156 829 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RN7SL189P-201ENST00000468631 289 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC106820.1-201ENST00000468708 420 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RN7SL794P-201ENST00000469816 280 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RAB5CP2-201ENST00000505368 637 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 CR545473.1-201ENST00000511554 277 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC073896.5-201ENST00000546464 542 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RABGGTA-218ENST00000560777 1197 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC116553.1-201ENST00000561752 397 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 HIST1H4D-201ENST00000614247 312 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 BX005040.2-201ENST00000620504 370 ntBASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 SRPK2-214ENST00000489828 2560 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 CLCN4-203ENST00000421085 6534 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 ZNF529-201ENST00000334116 5238 ntTSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 HAUS2-201ENST00000260372 3949 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 PISD-201ENST00000266095 2655 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 MFSD4A-201ENST00000367147 4095 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 MEF2C-221ENST00000514015 2772 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AL136295.4-201ENST00000561419 4351 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 ZNF37A-206ENST00000638053 4448 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 COLQ-203ENST00000383788 3005 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 WDR62-201ENST00000270301 4632 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 TBL1X-202ENST00000380961 4674 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RHBDF2-215ENST00000591885 3599 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 ZNF91-201ENST00000300619 5489 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 NBPF3-213ENST00000619554 1831 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 ACBD5-203ENST00000375901 3685 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 ARF1-201ENST00000272102 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 SLC13A3-211ENST00000495082 1887 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 AC007388.1-208ENST00000438649 1901 ntTSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 IL18R1-203ENST00000409599 3854 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 SEC31A-228ENST00000509142 3861 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 NXF5-207ENST00000537026 1991 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 ZNF391-201ENST00000244576 4079 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 TRAF3IP2-208ENST00000392556 2188 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 RGS7-202ENST00000366563 2206 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 GINS3-201ENST00000318129 2274 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 MPP4-202ENST00000359962 2436 ntTSL 5 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 ZNF223-201ENST00000434772 2418 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 TMEM108-203ENST00000508711 2470 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
KRTAP3-3Q9BYR6 MIP-201ENST00000257979 2599 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 PEX12-204ENST00000613219 2682 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 AP1B1-205ENST00000415447 2838 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 CUX1-212ENST00000547394 2878 ntTSL 2 BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 LRRN2-202ENST00000367176 3211 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 LINC00661-204ENST00000549354 3340 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 LINC01140-210ENST00000590653 3315 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 PIWIL2-202ENST00000454009 3442 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 LOXL3-201ENST00000264094 3502 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 NPHS1-202ENST00000378910 4276 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 NR1I2-202ENST00000393716 4417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 DLAT-201ENST00000280346 4458 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 UBOX5-201ENST00000217173 4631 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 CUL9-201ENST00000252050 7780 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 ABLIM1-201ENST00000277895 2657 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
KRTAP3-3Q9BYR6 NT5C1B-201ENST00000304081 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms