RNA–Protein interactions for RNA: ENST00000421085.6

CLCN4-203, Transcript of chloride voltage-gated channel 4, humanhuman

TSL 5 BASIC

Gene CLCN4, Length 6,534 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-203ENST00000421085 DCAF8L2P0C7V8 631 aa20.63■□□□□ 0.89
CLCN4-203ENST00000421085 SUPT5HO00267 1087 aaKnown RBP20.06■□□□□ 0.8
CLCN4-203ENST00000421085 PELP1Q8IZL8 1130 aaKnown RBP19.88■□□□□ 0.77
CLCN4-203ENST00000421085 EHMT2Q96KQ7 1210 aa19.58■□□□□ 0.73
CLCN4-203ENST00000421085 SHROOM4Q9ULL8 1493 aa19.51■□□□□ 0.71
CLCN4-203ENST00000421085 PCGF6Q9BYE7 350 aa19.31■□□□□ 0.68
CLCN4-203ENST00000421085 CENPBP07199 599 aaPredicted RBP19.18■□□□□ 0.66
CLCN4-203ENST00000421085 ERICH6Q7L0X2 663 aa19.16■□□□□ 0.66
CLCN4-203ENST00000421085 NISCHQ9Y2I1 1504 aa19.15■□□□□ 0.66
CLCN4-203ENST00000421085 APLP2Q06481 763 aa19.1■□□□□ 0.65
CLCN4-203ENST00000421085 MYT1Q01538 1121 aa19.08■□□□□ 0.65
CLCN4-203ENST00000421085 TTBK1Q5TCY1 1321 aaPredicted RBP19.01■□□□□ 0.63
CLCN4-203ENST00000421085 ZEB1P37275 1124 aaPredicted RBP18.98■□□□□ 0.63
CLCN4-203ENST00000421085 FAM9AQ8IZU1 332 aaPredicted RBP18.97■□□□□ 0.63
CLCN4-203ENST00000421085 CCER1Q8TC90 406 aaPredicted RBP18.96■□□□□ 0.63
CLCN4-203ENST00000421085 YTHDC1Q96MU7 727 aaKnown RBP18.75■□□□□ 0.59
CLCN4-203ENST00000421085 NEFLP07196 543 aa18.65■□□□□ 0.58
CLCN4-203ENST00000421085 RANGAP1P46060 587 aaPredicted RBP18.53■□□□□ 0.56
CLCN4-203ENST00000421085 TRIM41Q8WV44 630 aa18.49■□□□□ 0.55
CLCN4-203ENST00000421085 HRCP23327 699 aa18.44■□□□□ 0.54
CLCN4-203ENST00000421085 TRIM26Q12899 539 aaPredicted RBP18.32■□□□□ 0.52
CLCN4-203ENST00000421085 PPARGC1BQ86YN6 1023 aaKnown RBP18.31■□□□□ 0.52
CLCN4-203ENST00000421085 ATP1B4Q9UN42 357 aaPredicted RBP18.3■□□□□ 0.52
CLCN4-203ENST00000421085 UBTFP17480 764 aaKnown RBP18.28■□□□□ 0.52
CLCN4-203ENST00000421085 DAXXQ9UER7 740 aaPredicted RBP18.14■□□□□ 0.49
CLCN4-203ENST00000421085 LOC105371045A0A1W2PR82 267 aa17.93■□□□□ 0.46
CLCN4-203ENST00000421085 RTL5Q5HYW3 569 aaPredicted RBP17.9■□□□□ 0.46
CLCN4-203ENST00000421085 DIEXFQ68CQ4 756 aaKnown RBP17.9■□□□□ 0.46
CLCN4-203ENST00000421085 ITGAEP38570 1179 aa17.87■□□□□ 0.45
CLCN4-203ENST00000421085 POLR3GLQ9BT43 218 aa17.87■□□□□ 0.45
CLCN4-203ENST00000421085 HNRNPUL2Q1KMD3 747 aaKnown RBP17.84■□□□□ 0.45
CLCN4-203ENST00000421085 GTF3C3Q9Y5Q9 886 aa17.8■□□□□ 0.44
CLCN4-203ENST00000421085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.79■□□□□ 0.44
CLCN4-203ENST00000421085 CNGB1Q14028 1251 aaPredicted RBP17.78■□□□□ 0.44
CLCN4-203ENST00000421085 CHIC1Q5VXU3 224 aa17.76■□□□□ 0.43
CLCN4-203ENST00000421085 ZNF316A6NFI3 1004 aaPredicted RBP17.75■□□□□ 0.43
CLCN4-203ENST00000421085 BCANQ96GW7 911 aa17.68■□□□□ 0.42
CLCN4-203ENST00000421085 CLSPNQ9HAW4 1339 aa17.62■□□□□ 0.41
CLCN4-203ENST00000421085 CDK11AQ9UQ88 783 aaPredicted RBP17.52■□□□□ 0.39
CLCN4-203ENST00000421085 ACIN1Q9UKV3 1341 aaKnown RBP17.48■□□□□ 0.39
CLCN4-203ENST00000421085 MYT1LQ9UL68 1186 aa17.41■□□□□ 0.38
CLCN4-203ENST00000421085 SLC4A1APQ9BWU0 796 aaKnown RBP17.37■□□□□ 0.37
CLCN4-203ENST00000421085 NEUROD1Q13562 356 aa17.36■□□□□ 0.37
CLCN4-203ENST00000421085 ANP32CO43423 234 aa17.36■□□□□ 0.37
CLCN4-203ENST00000421085 FAM50AQ14320 339 aaKnown RBP17.31■□□□□ 0.36
CLCN4-203ENST00000421085 EIF5BO60841 1220 aaKnown RBP17.24■□□□□ 0.35
CLCN4-203ENST00000421085 ANP32AP39687 249 aaKnown RBP17.23■□□□□ 0.35
CLCN4-203ENST00000421085 TRIM52Q96A61 297 aa17.22■□□□□ 0.35
CLCN4-203ENST00000421085 NPM2Q86SE8 214 aaKnown RBP17.15■□□□□ 0.34
CLCN4-203ENST00000421085 FKBP8Q14318 412 aa17.11■□□□□ 0.33
CLCN4-203ENST00000421085 ZNF326Q5BKZ1 582 aaKnown RBP17.1■□□□□ 0.33
CLCN4-203ENST00000421085 ZBTB47Q9UFB7 747 aaPredicted RBP17.08■□□□□ 0.33
CLCN4-203ENST00000421085 CANXP27824 592 aaKnown RBP17.06■□□□□ 0.32
CLCN4-203ENST00000421085 BCL11AQ9H165 835 aa17.03■□□□□ 0.32
CLCN4-203ENST00000421085 SCAF1Q9H7N4 1312 aaKnown RBP17.02■□□□□ 0.31
CLCN4-203ENST00000421085 GLIPR1L2Q4G1C9 344 aa16.99■□□□□ 0.31
CLCN4-203ENST00000421085 NBR1Q14596 966 aa16.96■□□□□ 0.31
CLCN4-203ENST00000421085 ANP32BQ92688 251 aaKnown RBP16.92■□□□□ 0.3
CLCN4-203ENST00000421085 HNRNPUQ00839 825 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLCN4-203ENST00000421085 HSP90AA1P07900 732 aaKnown RBP16.81■□□□□ 0.28
CLCN4-203ENST00000421085 DDX10Q13206 875 aaKnown RBP16.8■□□□□ 0.28
CLCN4-203ENST00000421085 FAM9BQ8IZU0 186 aa16.79■□□□□ 0.28
CLCN4-203ENST00000421085 SLC24A1O60721 1099 aa16.78■□□□□ 0.28
CLCN4-203ENST00000421085 UPF2Q9HAU5 1272 aaKnown RBP16.77■□□□□ 0.28
CLCN4-203ENST00000421085 ARXQ96QS3 562 aa16.76■□□□□ 0.27
CLCN4-203ENST00000421085 CCDC136Q96JN2 1154 aa16.76■□□□□ 0.27
CLCN4-203ENST00000421085 NEFMP07197 916 aa16.75■□□□□ 0.27
CLCN4-203ENST00000421085 DCAF1Q9Y4B6 1507 aa16.73■□□□□ 0.27
CLCN4-203ENST00000421085 MIER1Q8N108 512 aa16.72■□□□□ 0.27
CLCN4-203ENST00000421085 IRX6P78412 446 aaPredicted RBP16.69■□□□□ 0.26
CLCN4-203ENST00000421085 ANP32EQ9BTT0 268 aa16.69■□□□□ 0.26
CLCN4-203ENST00000421085 SALL2Q9Y467 1007 aaPredicted RBP16.69■□□□□ 0.26
CLCN4-203ENST00000421085 TONSLQ96HA7 1378 aa16.68■□□□□ 0.26
CLCN4-203ENST00000421085 P3H3Q8IVL6 736 aa16.67■□□□□ 0.26
CLCN4-203ENST00000421085 CSRNP3Q8WYN3 585 aa16.67■□□□□ 0.26
CLCN4-203ENST00000421085 ARID3CA6NKF2 412 aa16.6■□□□□ 0.25
CLCN4-203ENST00000421085 TMC1Q8TDI8 760 aa16.57■□□□□ 0.24
CLCN4-203ENST00000421085 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.56■□□□□ 0.24
CLCN4-203ENST00000421085 MRS2Q9HD23 443 aa16.55■□□□□ 0.24
CLCN4-203ENST00000421085 ZNF777Q9ULD5 760 aaPredicted RBP16.53■□□□□ 0.24
CLCN4-203ENST00000421085 PABPN1Q86U42 306 aaKnown RBP eCLIP16.52■□□□□ 0.24
CLCN4-203ENST00000421085 DDRGK1Q96HY6 314 aa16.49■□□□□ 0.23
CLCN4-203ENST00000421085 HIRIP3Q9BW71 556 aaPredicted RBP16.47■□□□□ 0.23
CLCN4-203ENST00000421085 TRIM44Q96DX7 344 aaPredicted RBP16.47■□□□□ 0.23
CLCN4-203ENST00000421085 FBLN2P98095 1184 aa16.46■□□□□ 0.23
CLCN4-203ENST00000421085 RTN4Q9NQC3 1192 aaKnown RBP16.46■□□□□ 0.23
CLCN4-203ENST00000421085 WDR43Q15061 677 aaKnown RBP eCLIP16.43■□□□□ 0.22
CLCN4-203ENST00000421085 BECN1Q14457 450 aa16.42■□□□□ 0.22
CLCN4-203ENST00000421085 SUPT16HQ9Y5B9 1047 aaKnown RBP16.37■□□□□ 0.21
CLCN4-203ENST00000421085 TNNT2P45379 298 aaPredicted RBP16.36■□□□□ 0.21
CLCN4-203ENST00000421085 ERICH6BQ5W0A0 696 aa16.36■□□□□ 0.21
CLCN4-203ENST00000421085 PPM1GO15355 546 aaPredicted RBP16.35■□□□□ 0.21
CLCN4-203ENST00000421085 CHIC2Q9UKJ5 165 aa16.35■□□□□ 0.21
CLCN4-203ENST00000421085 NAP1L5Q96NT1 182 aaPredicted RBP16.34■□□□□ 0.21
CLCN4-203ENST00000421085 LAS1LQ9Y4W2 734 aaKnown RBP16.34■□□□□ 0.21
CLCN4-203ENST00000421085 CHGAP10645 457 aaKnown RBP16.32■□□□□ 0.2
CLCN4-203ENST00000421085 NOP58Q9Y2X3 529 aaKnown RBP16.32■□□□□ 0.2
CLCN4-203ENST00000421085 GOLGA6L22H0YM25 854 aa16.3■□□□□ 0.2
CLCN4-203ENST00000421085 NCLP19338 710 aaKnown RBP16.29■□□□□ 0.2
CLCN4-203ENST00000421085 KDM2AQ9Y2K7 1162 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms