Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC007562.1-201ENST00000421819 517 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 PLA2G12AP2-201ENST00000424744 264 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 MTND1P20-201ENST00000430341 950 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC108479.1-201ENST00000431142 427 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC023274.2-201ENST00000445264 521 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 RPL17P2-201ENST00000491913 451 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC113367.2-201ENST00000505749 160 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 RNU5A-7P-201ENST00000515979 116 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 RN7SKP183-201ENST00000517169 324 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 NPIPB14P-203ENST00000532298 987 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC023825.1-201ENST00000566704 1030 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC007599.1-201ENST00000568688 1174 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VRK3Q8IV63 GLYATL1P2-202ENST00000588046 902 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC025175.1-201ENST00000606482 759 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 uc_338.31-201ENST00000615595 186 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC245389.2-201ENST00000616023 576 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC078880.5-201ENST00000617845 421 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC242843.1-201ENST00000618702 573 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AL137067.2-201ENST00000621202 131 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC092184.1-201ENST00000625042 715 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 AC003992.1-201ENST00000635364 557 ntBASIC6.07□□□□□ -1.44
VRK3Q8IV63 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
VRK3Q8IV63 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
VRK3Q8IV63 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.07□□□□□ -1.44
VRK3Q8IV63 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VRK3Q8IV63 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VRK3Q8IV63 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VRK3Q8IV63 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VRK3Q8IV63 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 RNA5SP232-201ENST00000364144 119 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 SNORD116-1-201ENST00000384335 95 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 RN7SKP86-201ENST00000410454 332 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL121823.1-201ENST00000418369 741 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 NDUFA5P10-201ENST00000432147 357 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 THAP5P1-201ENST00000439089 262 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL031313.1-201ENST00000448435 256 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC104339.1-201ENST00000465478 348 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 RN7SL362P-201ENST00000494228 267 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
VRK3Q8IV63 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC009097.3-201ENST00000563557 1018 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 RN7SL230P-201ENST00000580835 303 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL606834.3-201ENST00000602615 496 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 MIR6780B-201ENST00000610307 79 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 LINC00216-201ENST00000623548 1126 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 OXSM-209ENST00000626005 309 ntTSL 3 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AC073488.6-201ENST00000632293 754 ntBASIC6.06□□□□□ -1.44
VRK3Q8IV63 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC6.06□□□□□ -1.44
VRK3Q8IV63 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms