RNA–Protein interactions for RNA: ENST00000520880.1

CTHRC1-204, Transcript of collagen triple helix repeat containing 1, humanhuman

TSL 4 BASIC

Gene CTHRC1, Length 560 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-204ENST00000520880 AEBP2Q6ZN18 517 aaPredicted RBP28.86■■■□□ 2.21
CTHRC1-204ENST00000520880 CHIC1Q5VXU3 224 aa27.68■■■□□ 2.02
CTHRC1-204ENST00000520880 SENP3Q9H4L4 574 aaPredicted RBP24.5■■□□□ 1.51
CTHRC1-204ENST00000520880 PHF23Q9BUL5 403 aaPredicted RBP24.32■■□□□ 1.48
CTHRC1-204ENST00000520880 FOXD1Q16676 465 aa22.84■■□□□ 1.25
CTHRC1-204ENST00000520880 PLPPR3Q6T4P5 718 aa22.24■■□□□ 1.15
CTHRC1-204ENST00000520880 PPP6R1Q9UPN7 881 aa21.63■■□□□ 1.05
CTHRC1-204ENST00000520880 ADRA2BP18089 450 aa21.57■■□□□ 1.04
CTHRC1-204ENST00000520880 PIAS4Q8N2W9 510 aaPredicted RBP21.4■■□□□ 1.02
CTHRC1-204ENST00000520880 MSH5O43196 834 aa21.2■□□□□ 0.98
CTHRC1-204ENST00000520880 POTEDQ86YR6 584 aa20.2■□□□□ 0.82
CTHRC1-204ENST00000520880 MAPK8IP2Q13387 824 aaPredicted RBP19.73■□□□□ 0.75
CTHRC1-204ENST00000520880 SCAF1Q9H7N4 1312 aaKnown RBP19.65■□□□□ 0.74
CTHRC1-204ENST00000520880 PPP4R3CPQ6ZMV5 832 aa19.55■□□□□ 0.72
CTHRC1-204ENST00000520880 DMRT2Q9Y5R5 561 aa19.5■□□□□ 0.71
CTHRC1-204ENST00000520880 CNKSR2Q8WXI2 1034 aa19.09■□□□□ 0.65
CTHRC1-204ENST00000520880 HOXD11P31277 338 aaPredicted RBP18.91■□□□□ 0.62
CTHRC1-204ENST00000520880 NCBP3Q53F19 620 aaKnown RBP18.85■□□□□ 0.61
CTHRC1-204ENST00000520880 RNF216Q9NWF9 866 aaPredicted RBP18.85■□□□□ 0.61
CTHRC1-204ENST00000520880 DCAF8L1A6NGE4 600 aa18.68■□□□□ 0.58
CTHRC1-204ENST00000520880 NPM3O75607 178 aaKnown RBP18.64■□□□□ 0.57
CTHRC1-204ENST00000520880 KCNA4P22459 653 aa18.59■□□□□ 0.57
CTHRC1-204ENST00000520880 RNF39Q9H2S5 420 aa18.16■□□□□ 0.5
CTHRC1-204ENST00000520880 DNAJC5BQ9UF47 199 aa18.16■□□□□ 0.5
CTHRC1-204ENST00000520880 CACNB1Q02641 598 aaPredicted RBP18.01■□□□□ 0.47
CTHRC1-204ENST00000520880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18■□□□□ 0.47
CTHRC1-204ENST00000520880 C1QBPQ07021 282 aaKnown RBP17.88■□□□□ 0.45
CTHRC1-204ENST00000520880 SLC4A2P04920 1241 aa17.74■□□□□ 0.43
CTHRC1-204ENST00000520880 U3KPZ7 1027 aaPredicted RBP17.7■□□□□ 0.42
CTHRC1-204ENST00000520880 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
CTHRC1-204ENST00000520880 SPINK5Q9NQ38 1064 aaPredicted RBP17.36■□□□□ 0.37
CTHRC1-204ENST00000520880 CAPN15O75808 1086 aa17.27■□□□□ 0.36
CTHRC1-204ENST00000520880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.24■□□□□ 0.35
CTHRC1-204ENST00000520880 HNRNPUL2Q1KMD3 747 aaKnown RBP17.24■□□□□ 0.35
CTHRC1-204ENST00000520880 FOXD4L1Q9NU39 408 aa17.21■□□□□ 0.35
CTHRC1-204ENST00000520880 MYCNP04198 464 aaPredicted RBP17.2■□□□□ 0.34
CTHRC1-204ENST00000520880 SAMD1Q6SPF0 538 aaPredicted RBP17.17■□□□□ 0.34
CTHRC1-204ENST00000520880 APLP2Q06481 763 aa17.14■□□□□ 0.33
CTHRC1-204ENST00000520880 ZBTB22O15209 634 aa17.12■□□□□ 0.33
CTHRC1-204ENST00000520880 DSG3P32926 999 aa17.11■□□□□ 0.33
CTHRC1-204ENST00000520880 TRHP20396 242 aaPredicted RBP17.08■□□□□ 0.32
CTHRC1-204ENST00000520880 ZNF219Q9P2Y4 722 aaPredicted RBP17.04■□□□□ 0.32
CTHRC1-204ENST00000520880 ABCB7O75027 752 aa16.93■□□□□ 0.3
CTHRC1-204ENST00000520880 ATF5Q9Y2D1 282 aaPredicted RBP16.84■□□□□ 0.29
CTHRC1-204ENST00000520880 POLA2Q14181 598 aa16.7■□□□□ 0.26
CTHRC1-204ENST00000520880 ATXN8OSP0DMR3 200 aa16.62■□□□□ 0.25
CTHRC1-204ENST00000520880 CSRNP3Q8WYN3 585 aa16.6■□□□□ 0.25
CTHRC1-204ENST00000520880 EHMT2Q96KQ7 1210 aa16.55■□□□□ 0.24
CTHRC1-204ENST00000520880 ZBTB12Q9Y330 459 aaPredicted RBP16.33■□□□□ 0.2
CTHRC1-204ENST00000520880 RBM42Q9BTD8 480 aaKnown RBP16.27■□□□□ 0.2
CTHRC1-204ENST00000520880 OSCARQ8IYS5 282 aa16.17■□□□□ 0.18
CTHRC1-204ENST00000520880 FBLN2P98095 1184 aa16.09■□□□□ 0.17
CTHRC1-204ENST00000520880 MKRN4PQ13434 485 aaPredicted RBP16.08■□□□□ 0.16
CTHRC1-204ENST00000520880 AKT1S1Q96B36 256 aa15.98■□□□□ 0.15
CTHRC1-204ENST00000520880 SPDYE2BA6NHP3 402 aa15.88■□□□□ 0.13
CTHRC1-204ENST00000520880 SPDYE6P0CI01 402 aa15.88■□□□□ 0.13
CTHRC1-204ENST00000520880 SPDYE2Q495Y8 402 aa15.88■□□□□ 0.13
CTHRC1-204ENST00000520880 POTEHQ6S545 545 aa15.88■□□□□ 0.13
CTHRC1-204ENST00000520880 REM2Q8IYK8 340 aaPredicted RBP15.86■□□□□ 0.13
CTHRC1-204ENST00000520880 CHRDL2Q6WN34 429 aa15.83■□□□□ 0.12
CTHRC1-204ENST00000520880 ZNF692Q9BU19 519 aaPredicted RBP15.76■□□□□ 0.11
CTHRC1-204ENST00000520880 SSUH2Q9Y2M2 353 aa15.73■□□□□ 0.11
CTHRC1-204ENST00000520880 PITPNM1O00562 1244 aa15.69■□□□□ 0.1
CTHRC1-204ENST00000520880 PABPN1Q86U42 306 aaKnown RBP eCLIP15.55■□□□□ 0.08
CTHRC1-204ENST00000520880 PIP4P2Q8N4L2 257 aa15.53■□□□□ 0.08
CTHRC1-204ENST00000520880 SPDYE1Q8NFV5 336 aaPredicted RBP15.53■□□□□ 0.08
CTHRC1-204ENST00000520880 CLEC11AQ9Y240 323 aa15.5■□□□□ 0.07
CTHRC1-204ENST00000520880 FXR2P51116 673 aaKnown RBP eCLIP15.48■□□□□ 0.07
CTHRC1-204ENST00000520880 SPDYE4A6NLX3 237 aa15.45■□□□□ 0.06
CTHRC1-204ENST00000520880 PRR29P0C7W0 189 aa15.28■□□□□ 0.04
CTHRC1-204ENST00000520880 PRKAR2AP13861 404 aaKnown RBP15.28■□□□□ 0.04
CTHRC1-204ENST00000520880 CHADLQ6NUI6 762 aa15.2■□□□□ 0.02
CTHRC1-204ENST00000520880 HAX1O00165 279 aa15.14■□□□□ 0.01
CTHRC1-204ENST00000520880 PROM2Q8N271 834 aa15.14■□□□□ 0.01
CTHRC1-204ENST00000520880 STAG3Q9UJ98 1225 aa15.14■□□□□ 0.01
CTHRC1-204ENST00000520880 EVX2Q03828 476 aa15.03■□□□□ -0
CTHRC1-204ENST00000520880 SP7Q8TDD2 431 aaPredicted RBP15.03■□□□□ -0
CTHRC1-204ENST00000520880 FKBP8Q14318 412 aa15.02■□□□□ -0
CTHRC1-204ENST00000520880 CREBZFQ9NS37 354 aa15.01□□□□□ -0.01
CTHRC1-204ENST00000520880 FARP1Q9Y4F1 1045 aaPredicted RBP14.99□□□□□ -0.01
CTHRC1-204ENST00000520880 C19orf67A6NJJ6 358 aa14.97□□□□□ -0.01
CTHRC1-204ENST00000520880 CD44P16070 742 aaKnown RBP14.81□□□□□ -0.04
CTHRC1-204ENST00000520880 MNX1P50219 401 aaPredicted RBP14.8□□□□□ -0.04
CTHRC1-204ENST00000520880 NPM1P06748 294 aaKnown RBP eCLIP14.69□□□□□ -0.06
CTHRC1-204ENST00000520880 GABBR2O75899 941 aa14.68□□□□□ -0.06
CTHRC1-204ENST00000520880 MIER1Q8N108 512 aa14.68□□□□□ -0.06
CTHRC1-204ENST00000520880 ZRANB1Q9UGI0 708 aa14.65□□□□□ -0.06
CTHRC1-204ENST00000520880 PLCD3Q8N3E9 789 aa14.61□□□□□ -0.07
CTHRC1-204ENST00000520880 PLEKHG5O94827 1062 aa14.6□□□□□ -0.07
CTHRC1-204ENST00000520880 ZNF579Q8NAF0 562 aaKnown RBP14.6□□□□□ -0.07
CTHRC1-204ENST00000520880 PAK3O75914 559 aaPredicted RBP14.56□□□□□ -0.08
CTHRC1-204ENST00000520880 FBXO3Q9UK99 471 aa14.56□□□□□ -0.08
CTHRC1-204ENST00000520880 PHF12Q96QT6 1004 aa14.5□□□□□ -0.09
CTHRC1-204ENST00000520880 CLCN6P51797 869 aa14.49□□□□□ -0.09
CTHRC1-204ENST00000520880 TSPYL2Q9H2G4 693 aaPredicted RBP14.48□□□□□ -0.09
CTHRC1-204ENST00000520880 RASEFQ8IZ41 740 aa14.45□□□□□ -0.1
CTHRC1-204ENST00000520880 ZBTB47Q9UFB7 747 aaPredicted RBP14.44□□□□□ -0.1
CTHRC1-204ENST00000520880 GALR2O43603 387 aaPredicted RBP14.42□□□□□ -0.1
CTHRC1-204ENST00000520880 VASPP50552 380 aaPredicted RBP14.42□□□□□ -0.1
CTHRC1-204ENST00000520880 POTEIP0CG38 1075 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms