Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC012618.2-201ENST00000428058 849 ntBASIC20.63■□□□□ 0.89
USP3Q9Y6I4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP3Q9Y6I4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 AL135905.2-201ENST00000584934 1404 ntBASIC20.62■□□□□ 0.89
USP3Q9Y6I4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 HTR7P1-201ENST00000538670 1336 ntBASIC20.62■□□□□ 0.89
USP3Q9Y6I4 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.62■□□□□ 0.89
USP3Q9Y6I4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 MIR718-201ENST00000390190 70 ntBASIC20.62■□□□□ 0.89
USP3Q9Y6I4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 TMEM179-206ENST00000616017 1645 ntBASIC20.62■□□□□ 0.89
USP3Q9Y6I4 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
USP3Q9Y6I4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
USP3Q9Y6I4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 AC125437.2-201ENST00000625180 2167 ntBASIC20.6■□□□□ 0.89
USP3Q9Y6I4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
USP3Q9Y6I4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 AF186192.3-201ENST00000583427 947 ntBASIC20.59■□□□□ 0.89
USP3Q9Y6I4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 AL353708.3-201ENST00000610272 989 ntBASIC20.59■□□□□ 0.89
USP3Q9Y6I4 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
USP3Q9Y6I4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms