Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 KRT16P6-202ENST00000425692 1426 ntBASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 TSPY5P-201ENST00000426936 936 ntBASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 AC011298.2-201ENST00000617989 482 ntBASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 AP000550.4-202ENST00000639755 178 ntBASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PCDHGA1Q9Y5H4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 AC004951.3-201ENST00000418645 1148 ntBASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 COX11P1-201ENST00000489116 835 ntBASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 AC139887.4-201ENST00000607877 719 ntBASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PCDHGA1Q9Y5H4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 MFAP1P1-201ENST00000442257 1255 ntBASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 FAM207BP-201ENST00000447172 505 ntBASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 AC092647.4-201ENST00000457211 535 ntBASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 YBX1P2-201ENST00000489612 999 ntBASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 AL512604.3-201ENST00000569583 964 ntBASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 Z98882.1-201ENST00000622160 2253 ntBASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.91■□□□□ 0.62
PCDHGA1Q9Y5H4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 KRT126P-201ENST00000549467 1181 ntBASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 AL031432.5-201ENST00000641059 760 ntBASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 AC018553.1-201ENST00000616682 1458 ntBASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA1Q9Y5H4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA1Q9Y5H4 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.89■□□□□ 0.61
PCDHGA1Q9Y5H4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms